############# Start of Description of junction: j6 # Number of strands: NUM_STRANDS = 5 LILLEY = HS4HS8HS6HS9HS6 FINGERPRINT = 13:25:43:56:97:121:140:153:162:171 LOOP_LENGTH_SUM = 33 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2480 S1_NAME_ID3 = 2489 S1_NUM_ID5_ORIG = 2480 S1_NUM_ID3_ORIG = 2489 S1_NAME2_ID5 = 2481 S1_NAME2_ID3 = 2488 S1_NUM2_ID5_ORIG = 2481 S1_NUM2_ID3_ORIG = 2488 S1_SQ2 = GGAUAACA S1_SQLEN2 = 8 S1_SQ = GGGAUAACAG S1_SQLEN = 10 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2094 S2_NAME_ID3 = 2106 S2_NUM_ID5_ORIG = 2094 S2_NUM_ID3_ORIG = 2106 S2_NAME2_ID5 = 2095 S2_NAME2_ID3 = 2105 S2_NUM2_ID5_ORIG = 2095 S2_NUM2_ID3_ORIG = 2105 S2_SQ2 = AAGCGAAGACC S2_SQLEN2 = 11 S2_SQ = GAAGCGAAGACCC S2_SQLEN = 13 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 2533 S3_NAME_ID3 = 2542 S3_NUM_ID5_ORIG = 2533 S3_NUM_ID3_ORIG = 2542 S3_NAME2_ID5 = 2534 S3_NAME2_ID3 = 2541 S3_NUM2_ID5_ORIG = 2534 S3_NUM2_ID3_ORIG = 2541 S3_SQ2 = CUCGAUGU S3_SQLEN2 = 8 S3_SQ = CCUCGAUGUC S3_SQLEN = 10 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2617 S4_NAME_ID3 = 2624 S4_NUM_ID5_ORIG = 2617 S4_NUM_ID3_ORIG = 2624 S4_NAME2_ID5 = 2618 S4_NAME2_ID3 = 2623 S4_NUM2_ID5_ORIG = 2618 S4_NUM2_ID3_ORIG = 2623 S4_SQ2 = GUUUAG S4_SQLEN2 = 6 S4_SQ = GGUUUAGA S4_SQLEN = 8 S4_CHAR = A ## Properties of strand 5 S5_NAME_ID5 = 2640 S5_NAME_ID3 = 2651 S5_NUM_ID5_ORIG = 2640 S5_NUM_ID3_ORIG = 2651 S5_NAME2_ID5 = 2641 S5_NAME2_ID3 = 2650 S5_NUM2_ID5_ORIG = 2641 S5_NUM2_ID3_ORIG = 2650 S5_SQ2 = CGGCUGCUAU S5_SQLEN2 = 10 S5_SQ = UCGGCUGCUAUC S5_SQLEN = 12 S5_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 13 H1_INID2 = 2 H1_OUTID2 = 12 H1_INID2_ORIG = 2481 H1_OUTID2_ORIG = 2105 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 69.20950065399217 H1_P_Y = 115.08247935777237 H1_P_Z = 84.68968154153171 # Orientation: H1_DX_X = 0.08066606106255847 H1_DX_Y = -0.8288296276744234 H1_DX_Z = 0.5536555200498867 H1_DY_X = -0.7533975237004569 H1_DY_Y = -0.4143822728688207 H1_DY_Z = -0.5105678243035925 H1_DZ_X = 0.6525987725047173 H1_DZ_Y = -0.3759372024968286 H1_DZ_Z = -0.6578647747859634 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 10 H2_INID2 = 2 H2_OUTID2 = 9 H2_INID2_ORIG = 2534 H2_OUTID2_ORIG = 2488 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 62.38330343142645 H2_P_Y = 107.25120363540925 H2_P_Z = 106.74739786886566 # Orientation: H2_DX_X = -0.45542486639556046 H2_DX_Y = 0.840521455138429 H2_DX_Z = 0.2934482484537426 H2_DY_X = -0.8882215557034527 H2_DY_Y = -0.4066119983056353 H2_DY_Z = -0.21384375328176475 H2_DZ_X = -0.06042068397758271 H2_DZ_Y = -0.35803682252792157 H2_DZ_Z = 0.9317504894883513 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 10 H3_INID2 = 2 H3_OUTID2 = 9 H3_INID2_ORIG = 2618 H3_OUTID2_ORIG = 2541 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 72.12409742479903 H3_P_Y = 131.8324192233361 H3_P_Z = 106.8956045209581 # Orientation: H3_DX_X = -0.03138280456930431 H3_DX_Y = -0.9626421539862235 H3_DX_Z = 0.2689520458113748 H3_DY_X = 0.8905334840264203 H3_DY_Y = 0.09524999081330066 H3_DY_Z = 0.4448342984503739 H3_DZ_X = -0.45383392711997317 H3_DZ_Y = 0.25347095024642385 H3_DZ_Z = 0.8542758594131215 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 8 H4_INID2 = 2 H4_OUTID2 = 7 H4_INID2_ORIG = 2641 H4_OUTID2_ORIG = 2623 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 89.01948243227699 H4_P_Y = 121.67823248600563 H4_P_Z = 95.14359052684253 # Orientation: H4_DX_X = 0.48225530735413713 H4_DX_Y = 0.6980386237703158 H4_DX_Z = -0.5293126658730358 H4_DY_X = 0.6264785307895124 H4_DY_Y = 0.1475360534852257 H4_DY_Z = 0.7653481321476079 H4_DZ_X = 0.6123352586521378 H4_DZ_Y = -0.7006962199461668 H4_DZ_Z = -0.3661561666346387 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 12 H5_INID2 = 2 H5_OUTID2 = 11 H5_INID2_ORIG = 2095 H5_OUTID2_ORIG = 2650 H5_INSEQ_CHAR = A H5_OUTSEQ_CHAR = A # Position: H5_P_X = 49.6999166820596 H5_P_Y = 139.38844616087513 H5_P_Z = 106.0155981586534 # Orientation: H5_DX_X = -0.8476317162452958 H5_DX_Y = -0.23942613820079828 H5_DX_Z = -0.47349297561981984 H5_DY_X = -0.03010497908696408 H5_DY_Y = -0.8692579271756813 H5_DY_Z = 0.49344133012587577 H5_DZ_X = -0.5297302746202348 H5_DZ_Y = 0.4325110176498299 H5_DZ_Z = 0.7296026697883491 ############# END of Description of junction: j6