############# Start of Description of junction: j3 # Number of strands: NUM_STRANDS = 6 LILLEY = HS2HS2HS2HS10HS10HS3 FINGERPRINT = 6:30:31:37:40:66:109:139:139:144:147:151:154:168:173 LOOP_LENGTH_SUM = 29 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2275 S1_NAME_ID3 = 2281 S1_NUM_ID5_ORIG = 2275 S1_NUM_ID3_ORIG = 2281 S1_NAME2_ID5 = 2276 S1_NAME2_ID3 = 2280 S1_NUM2_ID5_ORIG = 2276 S1_NUM2_ID3_ORIG = 2280 S1_SQ2 = UUUGA S1_SQLEN2 = 5 S1_SQ = GUUUGAC S1_SQLEN = 7 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2114 S2_NAME_ID3 = 2119 S2_NUM_ID5_ORIG = 2114 S2_NUM_ID3_ORIG = 2119 S2_NAME2_ID5 = 2115 S2_NAME2_ID3 = 2118 S2_NUM2_ID5_ORIG = 2115 S2_NUM2_ID3_ORIG = 2118 S2_SQ2 = UUUA S2_SQLEN2 = 4 S2_SQ = CUUUAC S2_SQLEN = 6 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 2289 S3_NAME_ID3 = 2294 S3_NUM_ID5_ORIG = 2289 S3_NUM_ID3_ORIG = 2294 S3_NAME2_ID5 = 2290 S3_NAME2_ID3 = 2293 S3_NUM2_ID5_ORIG = 2290 S3_NUM2_ID3_ORIG = 2293 S3_SQ2 = UACG S3_SQLEN2 = 4 S3_SQ = GUACGC S3_SQLEN = 6 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2314 S4_NAME_ID3 = 2319 S4_NUM_ID5_ORIG = 2314 S4_NUM_ID3_ORIG = 2319 S4_NAME2_ID5 = 2315 S4_NAME2_ID3 = 2318 S4_NUM2_ID5_ORIG = 2315 S4_NUM2_ID3_ORIG = 2318 S4_SQ2 = CGCC S4_SQLEN2 = 4 S4_SQ = GCGCCC S4_SQLEN = 6 S4_CHAR = A ## Properties of strand 5 S5_NAME_ID5 = 2420 S5_NAME_ID3 = 2433 S5_NUM_ID5_ORIG = 2420 S5_NUM_ID3_ORIG = 2433 S5_NAME2_ID5 = 2421 S5_NAME2_ID3 = 2432 S5_NUM2_ID5_ORIG = 2421 S5_NUM2_ID3_ORIG = 2432 S5_SQ2 = GUCUAGCGAACC S5_SQLEN2 = 12 S5_SQ = GGUCUAGCGAACCA S5_SQLEN = 14 S5_CHAR = A ## Properties of strand 6 S6_NAME_ID5 = 2458 S6_NAME_ID3 = 2471 S6_NUM_ID5_ORIG = 2458 S6_NUM_ID3_ORIG = 2471 S6_NAME2_ID5 = 2459 S6_NAME2_ID3 = 2470 S6_NUM2_ID5_ORIG = 2459 S6_NUM2_ID3_ORIG = 2470 S6_SQ2 = GAUGACAGAAAA S6_SQLEN2 = 12 S6_SQ = UGAUGACAGAAAAG S6_SQLEN = 14 S6_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 6 H1_INID2 = 2 H1_OUTID2 = 5 H1_INID2_ORIG = 2276 H1_OUTID2_ORIG = 2118 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 90.27824673089499 H1_P_Y = 107.78102375537823 H1_P_Z = 69.56752416339931 # Orientation: H1_DX_X = -0.23644290671199997 H1_DX_Y = -0.9670763337425399 H1_DX_Z = 0.09411756786417413 H1_DY_X = -0.6358682751659899 H1_DY_Y = 0.08076471860243828 H1_DY_Z = -0.7675601584673899 H1_DZ_X = 0.7346878850933933 H1_DZ_Y = -0.24133053048495867 H1_DZ_Z = -0.6340294051168627 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 7 H2_INID2 = 2 H2_OUTID2 = 6 H2_INID2_ORIG = 2290 H2_OUTID2_ORIG = 2280 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 77.22632039648586 H2_P_Y = 97.4938124052313 H2_P_Z = 90.4328852184984 # Orientation: H2_DX_X = -0.8881059138802243 H2_DX_Y = -0.3950222096265179 H2_DX_Z = -0.23500072262177696 H2_DY_X = 0.03886371910297726 H2_DY_Y = -0.5739769334867617 H2_DY_Z = 0.8179487093715636 H2_DZ_X = -0.4579929006747392 H2_DZ_Y = 0.7172920839706194 H2_DZ_Z = 0.5251043412548029 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 6 H3_INID2 = 2 H3_OUTID2 = 5 H3_INID2_ORIG = 2315 H3_OUTID2_ORIG = 2293 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 71.97727819186436 H3_P_Y = 77.86216523344905 H3_P_Z = 93.70602099631522 # Orientation: H3_DX_X = -0.2283225250368588 H3_DX_Y = -0.31531458274189106 H3_DX_Z = -0.9211110348221325 H3_DY_X = 0.32054544179831623 H3_DY_Y = -0.9176987352431496 H3_DY_Z = 0.23469054321691374 H3_DZ_X = -0.9193037823826842 H3_DZ_Y = -0.24167280617280085 H3_DZ_Z = 0.31060394468430275 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 6 H4_INID2 = 2 H4_OUTID2 = 5 H4_INID2_ORIG = 2421 H4_OUTID2_ORIG = 2318 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 83.08576663128373 H4_P_Y = 61.44456373501977 H4_P_Z = 75.68277777558576 # Orientation: H4_DX_X = 0.5750378868988122 H4_DX_Y = -0.3663928497935842 H4_DX_Z = 0.7314968955853942 H4_DY_X = -0.46709487740450584 H4_DY_Y = -0.8810938842741578 H4_DY_Z = -0.07413462481966349 H4_DZ_X = 0.6716798375218787 H4_DZ_Y = -0.29904823476289977 H4_DZ_Z = -0.6778025886287082 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 14 H5_INID2 = 2 H5_OUTID2 = 13 H5_INID2_ORIG = 2459 H5_OUTID2_ORIG = 2432 H5_INSEQ_CHAR = A H5_OUTSEQ_CHAR = A # Position: H5_P_X = 78.28709442695649 H5_P_Y = 72.81250386953572 H5_P_Z = 57.75525392569744 # Orientation: H5_DX_X = 0.7601046885701521 H5_DX_Y = 0.620279982383181 H5_DX_Z = -0.19363265702969557 H5_DY_X = 0.6176259832149782 H5_DY_Y = -0.5970409271568116 H5_DY_Z = 0.5119377659027293 H5_DZ_X = 0.20193812733458572 H5_DZ_Y = -0.5087188562992964 H5_DZ_Z = -0.8369146419881446 ## Properties of helix 6 H6_INID = 1 H6_OUTID = 14 H6_INID2 = 2 H6_OUTID2 = 13 H6_INID2_ORIG = 2115 H6_OUTID2_ORIG = 2470 H6_INSEQ_CHAR = A H6_OUTSEQ_CHAR = A # Position: H6_P_X = 81.2006097972194 H6_P_Y = 109.2211268200916 H6_P_Z = 76.37209305333933 # Orientation: H6_DX_X = 0.5160059764011748 H6_DX_Y = -0.49357843878242136 H6_DX_Z = 0.7000843928323093 H6_DY_X = 0.4016651407927867 H6_DY_Y = 0.8612952708963633 H6_DY_Z = 0.3111841432391458 H6_DZ_X = -0.7565731603686459 H6_DZ_Y = 0.12062661854113799 H6_DZ_Z = 0.6426867603344135 ############# END of Description of junction: j3