############# Start of Description of junction: j6 # Number of strands: NUM_STRANDS = 5 LILLEY = HS4HS8HS6HS9HS6 FINGERPRINT = 13:21:47:59:97:118:144:156:164:171 LOOP_LENGTH_SUM = 33 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2480 S1_NAME_ID3 = 2489 S1_NUM_ID5_ORIG = 2480 S1_NUM_ID3_ORIG = 2489 S1_NAME2_ID5 = 2481 S1_NAME2_ID3 = 2488 S1_NUM2_ID5_ORIG = 2481 S1_NUM2_ID3_ORIG = 2488 S1_SQ2 = GGAUAACA S1_SQLEN2 = 8 S1_SQ = GGGAUAACAG S1_SQLEN = 10 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2094 S2_NAME_ID3 = 2106 S2_NUM_ID5_ORIG = 2094 S2_NUM_ID3_ORIG = 2106 S2_NAME2_ID5 = 2095 S2_NAME2_ID3 = 2105 S2_NUM2_ID5_ORIG = 2095 S2_NUM2_ID3_ORIG = 2105 S2_SQ2 = AAGCGAAGACC S2_SQLEN2 = 11 S2_SQ = GAAGCGAAGACCC S2_SQLEN = 13 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 2533 S3_NAME_ID3 = 2542 S3_NUM_ID5_ORIG = 2533 S3_NUM_ID3_ORIG = 2542 S3_NAME2_ID5 = 2534 S3_NAME2_ID3 = 2541 S3_NUM2_ID5_ORIG = 2534 S3_NUM2_ID3_ORIG = 2541 S3_SQ2 = CUCGAUGU S3_SQLEN2 = 8 S3_SQ = CCUCGAUGUC S3_SQLEN = 10 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2617 S4_NAME_ID3 = 2624 S4_NUM_ID5_ORIG = 2617 S4_NUM_ID3_ORIG = 2624 S4_NAME2_ID5 = 2618 S4_NAME2_ID3 = 2623 S4_NUM2_ID5_ORIG = 2618 S4_NUM2_ID3_ORIG = 2623 S4_SQ2 = GUUUAG S4_SQLEN2 = 6 S4_SQ = GGUUUAGA S4_SQLEN = 8 S4_CHAR = A ## Properties of strand 5 S5_NAME_ID5 = 2640 S5_NAME_ID3 = 2651 S5_NUM_ID5_ORIG = 2640 S5_NUM_ID3_ORIG = 2651 S5_NAME2_ID5 = 2641 S5_NAME2_ID3 = 2650 S5_NUM2_ID5_ORIG = 2641 S5_NUM2_ID3_ORIG = 2650 S5_SQ2 = CGGCUGCUAU S5_SQLEN2 = 10 S5_SQ = UCGGCUGCUAUC S5_SQLEN = 12 S5_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 13 H1_INID2 = 2 H1_OUTID2 = 12 H1_INID2_ORIG = 2481 H1_OUTID2_ORIG = 2105 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 69.27221481421705 H1_P_Y = 115.057555138573 H1_P_Z = 84.27975437619071 # Orientation: H1_DX_X = 0.08117183454010046 H1_DX_Y = -0.8086919706350244 H1_DX_Z = 0.5826048660179879 H1_DY_X = -0.7661378731349515 H1_DY_Y = -0.4245164815225593 H1_DY_Z = -0.4825127109869243 H1_DZ_X = 0.6375295229443338 H1_DZ_Y = -0.40718921098937244 H1_DZ_Z = -0.6540283280013313 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 10 H2_INID2 = 2 H2_OUTID2 = 9 H2_INID2_ORIG = 2534 H2_OUTID2_ORIG = 2488 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 62.36504293798949 H2_P_Y = 107.46911007750923 H2_P_Z = 106.4604268891326 # Orientation: H2_DX_X = -0.4719081005865462 H2_DX_Y = 0.8190081135082607 H2_DX_Z = 0.32638697064746225 H2_DY_X = -0.8810071049550672 H2_DY_Y = -0.42395106447278863 H2_DY_Z = -0.2099808942525243 H2_DZ_X = -0.03360395243848302 H2_DZ_Y = -0.3866409250713474 H2_DZ_Z = 0.9216179085936176 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 10 H3_INID2 = 2 H3_OUTID2 = 9 H3_INID2_ORIG = 2618 H3_OUTID2_ORIG = 2541 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 72.14107675720881 H3_P_Y = 131.6790260290661 H3_P_Z = 106.86563772616634 # Orientation: H3_DX_X = -0.05526339242526035 H3_DX_Y = -0.96280715402483 H3_DX_Z = 0.26447748791960635 H3_DY_X = 0.8680842775258526 H3_DY_Y = 0.08454417119622804 H3_DY_Z = 0.48916456354604065 H3_DZ_X = -0.49333117129378934 H3_DZ_Y = 0.25662164225832385 H3_DZ_Z = 0.8311255549882617 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 8 H4_INID2 = 2 H4_OUTID2 = 7 H4_INID2_ORIG = 2641 H4_OUTID2_ORIG = 2623 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 89.5371937108335 H4_P_Y = 121.7148665267569 H4_P_Z = 94.78110855540278 # Orientation: H4_DX_X = 0.4319063500186786 H4_DX_Y = 0.7439057012062449 H4_DX_Z = -0.5099619716472858 H4_DY_X = 0.6118080774228787 H4_DY_Y = 0.17378952443888807 H4_DY_Z = 0.7716787398881877 H4_DZ_X = 0.6626822626369773 H4_DZ_Y = -0.6452918013644222 H4_DZ_Z = -0.3800667176670345 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 12 H5_INID2 = 2 H5_OUTID2 = 11 H5_INID2_ORIG = 2095 H5_OUTID2_ORIG = 2650 H5_INSEQ_CHAR = A H5_OUTSEQ_CHAR = A # Position: H5_P_X = 49.98471804599348 H5_P_Y = 139.8744647078912 H5_P_Z = 105.62310560558466 # Orientation: H5_DX_X = -0.8589045649526739 H5_DX_Y = -0.23091777481894837 H5_DX_Z = -0.4571213510394472 H5_DY_X = -0.04333577149458279 H5_DY_Y = -0.8566071965352933 H5_DY_Z = 0.514146012094713 H5_DZ_X = -0.5102988920352729 H5_DZ_Y = 0.4614120632543006 H5_DZ_Z = 0.7257368315518846 ############# END of Description of junction: j6