#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 35:65:74:80:107:109:113:120:126:172
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.82081262891168
H1_P_Y = 45.31032986208901
H1_P_Z = 9.853763714154631
# Orientation:
H1_DX_X = -0.13982039639215316
H1_DX_Y = 0.8131330454742169
H1_DX_Z = 0.5650353149233887
H1_DY_X = -0.9365573064608412
H1_DY_Y = 0.07663203660849405
H1_DY_Z = -0.3420350021270373
H1_DZ_X = -0.3214197698766412
H1_DZ_Y = -0.5770114221773
H1_DZ_Z = 0.7508309731286928
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.52015144356176
H2_P_Y = 70.85918896980405
H2_P_Z = -0.06087417463609279
# Orientation:
H2_DX_X = 0.820163787835611
H2_DX_Y = -0.42450959851102255
H2_DX_Z = 0.3835661115050797
H2_DY_X = 0.38150995586593694
H2_DY_Y = -0.09381110694269523
H2_DY_Z = -0.9195920996775533
H2_DZ_X = 0.42635843453402344
H2_DZ_Y = 0.9005504300072147
H2_DZ_Z = 0.08501416538143455
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 134.28667947877432
H3_P_Y = 50.28771551775977
H3_P_Z = -6.38916872276506
# Orientation:
H3_DX_X = 0.6225865706777824
H3_DX_Y = 0.46259991798383027
H3_DX_Z = -0.6311792755573054
H3_DY_X = -0.21562389551789352
H3_DY_Y = -0.6739348297453347
H3_DY_Z = -0.7066244978330527
H3_DZ_X = -0.7522581323544273
H3_DZ_Y = 0.576032257028622
H3_DZ_Z = -0.31983517812951945
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.55299029156626
H4_P_Y = 38.35977546506952
H4_P_Z = -1.8681914404757731
# Orientation:
H4_DX_X = 0.4311716871188196
H4_DX_Y = 0.6948167734747415
H4_DX_Z = 0.575604575663931
H4_DY_X = -0.6125446061022046
H4_DY_Y = -0.2429916273524526
H4_DY_Z = 0.7521596735878038
H4_DZ_X = 0.6624802500921874
H4_DZ_Y = -0.6768934335142873
H4_DZ_Z = 0.32083515689998077
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.4555160614193
H5_P_Y = 56.34822634503533
H5_P_Z = 11.36660471132028
# Orientation:
H5_DX_X = -0.37990731150850365
H5_DX_Y = 0.5663473628329498
H5_DX_Z = 0.7313830045021117
H5_DY_X = 0.3134283249825103
H5_DY_Y = -0.6650810375166785
H5_DY_Z = 0.6778125837091
H5_DZ_X = 0.8703063367349557
H5_DZ_Y = 0.48674210640533744
H5_DZ_Z = 0.07515984360725447
#############  END of Description of junction: j1