#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 38:66:73:80:108:110:116:117:127:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  98
S1_NAME_ID3 = 107
S1_NUM_ID5_ORIG =  98
S1_NUM_ID3_ORIG = 107
S1_NAME2_ID5 =  100
S1_NAME2_ID3 = 105
S1_NUM2_ID5_ORIG =  100
S1_NUM2_ID3_ORIG = 105
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  308
S3_NAME_ID3 = 313
S3_NUM_ID5_ORIG =  308
S3_NUM_ID3_ORIG = 313
S3_NAME2_ID5 =  310
S3_NAME2_ID3 = 311
S3_NUM2_ID5_ORIG =  310
S3_NUM2_ID3_ORIG = 311
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  330
S4_NAME_ID3 = 335
S4_NUM_ID5_ORIG =  330
S4_NUM_ID3_ORIG = 335
S4_NAME2_ID5 =  332
S4_NAME2_ID3 = 333
S4_NUM2_ID5_ORIG =  332
S4_NUM2_ID3_ORIG = 333
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  344
S5_NAME_ID3 = 351
S5_NUM_ID5_ORIG =  344
S5_NUM_ID3_ORIG = 351
S5_NAME2_ID5 =  346
S5_NAME2_ID3 = 349
S5_NUM2_ID5_ORIG =  346
S5_NUM2_ID3_ORIG = 349
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 100
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 94.67973018734848
H1_P_Y = 183.19191763230987
H1_P_Z = 159.95201352372337
# Orientation:
H1_DX_X = 0.3519982595340565
H1_DX_Y = -0.7447107819529037
H1_DX_Z = 0.5670124130282375
H1_DY_X = 0.9220234953758535
H1_DY_Y = 0.1715806312478776
H1_DY_Z = -0.34703423599907524
H1_DZ_X = 0.16115178950251163
H1_DZ_Y = 0.6449542140522055
H1_DZ_Z = 0.7470369217893165
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 310
H2_OUTID2_ORIG = 105
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 86.16877346597477
H2_P_Y = 154.12140514487237
H2_P_Z = 150.74302224671848
# Orientation:
H2_DX_X = -0.9234267415750281
H2_DX_Y = 0.17383881706891202
H2_DX_Z = 0.3421448795820652
H2_DY_X = -0.3499855327740562
H2_DY_Y = -0.0156749318238667
H2_DY_Z = -0.9366239498118603
H2_DZ_X = -0.1574585018123571
H2_DZ_Y = -0.9846493600223312
H2_DZ_Z = 0.07531572222717386
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 332
H3_OUTID2_ORIG = 311
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 78.08648520025731
H3_P_Y = 172.9303863023817
H3_P_Z = 144.1565750896526
# Orientation:
H3_DX_X = -0.4581489952355611
H3_DX_Y = -0.6151043960128675
H3_DX_Z = -0.6416744347177143
H3_DY_X = 0.03161488088379372
H3_DY_Y = 0.7101616632383525
H3_DY_Z = -0.7033284519861525
H3_DZ_X = 0.8883130064742772
H3_DZ_Y = -0.3425156844178048
H3_DZ_Z = -0.3059134002564292
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 346
H4_OUTID2_ORIG = 333
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 63.683376621441134
H4_P_Y = 181.442327301191
H4_P_Z = 148.4955792468299
# Orientation:
H4_DX_X = -0.24304207922379817
H4_DX_Y = -0.7560920039853727
H4_DX_Z = 0.6076639114148463
H4_DY_X = 0.5265338336677345
H4_DY_Y = 0.4232943600352712
H4_DY_Z = 0.7372814976421864
H4_DZ_X = -0.8146733515524716
H4_DZ_Y = 0.49914603701896
H4_DZ_Z = 0.2952296800772558
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 349
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 71.7009464607286
H5_P_Y = 165.35923397082163
H5_P_Z = 161.68988887123552
# Orientation:
H5_DX_X = 0.52968374113469
H5_DX_Y = -0.4063021832830884
H5_DX_Z = 0.7445493067869506
H5_DY_X = -0.4412063124560177
H5_DY_Y = 0.6177171070476675
H5_DY_Z = 0.6509704797528286
H5_DZ_X = -0.7244115710192176
H5_DZ_Y = -0.6733083331728835
H5_DZ_Z = 0.14793162019475403
#############  END of Description of junction: j1