#############  Start of Description of junction: j9
# Number of strands:
NUM_STRANDS = 5
LILLEY = HS1HS2HS18HS15HS9
FINGERPRINT = 35:66:67:83:94:107:116:150:154:171
LOOP_LENGTH_SUM = 45
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  632
S1_NAME_ID3 = 639
S1_NUM_ID5_ORIG =  632
S1_NUM_ID3_ORIG = 639
S1_NAME2_ID5 =  634
S1_NAME2_ID3 = 637
S1_NUM2_ID5_ORIG =  634
S1_NUM2_ID3_ORIG = 637
S1_SQ2 = CUAG
S1_SQLEN2 = 4
S1_SQ = GGCUAGAC
S1_SQLEN = 8
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  550
S2_NAME_ID3 = 573
S2_NUM_ID5_ORIG =  550
S2_NUM_ID3_ORIG = 573
S2_NAME2_ID5 =  552
S2_NAME2_ID3 = 571
S2_NUM2_ID5_ORIG =  552
S2_NUM2_ID3_ORIG = 571
S2_SQ2 = CGUAAAGGGCGUGUAGGCGG
S2_SQLEN2 = 20
S2_SQ = GGCGUAAAGGGCGUGUAGGCGGCC
S2_SQLEN = 24
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  733
S3_NAME_ID3 = 753
S3_NUM_ID5_ORIG =  733
S3_NUM_ID3_ORIG = 753
S3_NAME2_ID5 =  735
S3_NAME2_ID3 = 751
S3_NUM2_ID5_ORIG =  735
S3_NUM2_ID3_ORIG = 751
S3_SQ2 = GACGCUGAGGCGCGAAA
S3_SQLEN2 = 17
S3_SQ = GUGACGCUGAGGCGCGAAAGC
S3_SQLEN = 21
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  792
S4_NAME_ID3 = 806
S4_NUM_ID5_ORIG =  792
S4_NUM_ID3_ORIG = 806
S4_NAME2_ID5 =  794
S4_NAME2_ID3 = 804
S4_NUM2_ID5_ORIG =  794
S4_NUM2_ID3_ORIG = 804
S4_SQ2 = CCUAAACGAUG
S4_SQLEN2 = 11
S4_SQ = GCCCUAAACGAUGCG
S4_SQLEN = 15
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  854
S5_NAME_ID3 = 860
S5_NUM_ID5_ORIG =  854
S5_NUM_ID3_ORIG = 860
S5_NAME2_ID5 =  856
S5_NAME2_ID3 = 858
S5_NUM2_ID5_ORIG =  856
S5_NUM2_ID3_ORIG = 858
S5_SQ2 = CCG
S5_SQLEN2 = 3
S5_SQ = CGCCGCC
S5_SQLEN = 7
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 24
H1_INID2 = 3
H1_OUTID2 = 22
H1_INID2_ORIG = 634
H1_OUTID2_ORIG = 571
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 104.13855779562444
H1_P_Y = 115.94852856252105
H1_P_Z = 110.92899951557426
# Orientation:
H1_DX_X = 0.26795669014272505
H1_DX_Y = -0.9619707864974316
H1_DX_Z = -0.053022807670544125
H1_DY_X = 0.7765570671673032
H1_DY_Y = 0.24822841240262505
H1_DY_Z = -0.5790870199793545
H1_DZ_X = 0.5702265634291876
H1_DZ_Y = 0.11399500516066041
H1_DZ_Z = 0.8135396764498637
## Properties of helix 2
H2_INID = 1
H2_OUTID = 8
H2_INID2 = 3
H2_OUTID2 = 6
H2_INID2_ORIG = 735
H2_OUTID2_ORIG = 637
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 90.08804733607688
H2_P_Y = 102.52085745323241
H2_P_Z = 95.19145424348143
# Orientation:
H2_DX_X = -0.4128765579853422
H2_DX_Y = 0.8933745976508334
H2_DX_Z = 0.17724213984942594
H2_DY_X = 0.3893410974410614
H2_DY_Y = 0.34904768237926476
H2_DY_Z = -0.8523961668549731
H2_DZ_X = -0.8233750407375595
H2_DZ_Y = -0.28292674616919555
H2_DZ_Z = -0.4919410519488423
## Properties of helix 3
H3_INID = 1
H3_OUTID = 21
H3_INID2 = 3
H3_OUTID2 = 19
H3_INID2_ORIG = 794
H3_OUTID2_ORIG = 751
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 45.543029445220284
H3_P_Y = 124.06478550628805
H3_P_Z = 93.8966283913258
# Orientation:
H3_DX_X = -0.33917329540062724
H3_DX_Y = 0.5601021270074114
H3_DX_Z = 0.7558088931792497
H3_DY_X = 0.5517453162534878
H3_DY_Y = 0.7691748160660552
H3_DY_Z = -0.3224084495203101
H3_DZ_X = -0.7619308247337315
H3_DZ_Y = 0.30766168050557496
H3_DZ_Z = -0.569917282304246
## Properties of helix 4
H4_INID = 1
H4_OUTID = 15
H4_INID2 = 3
H4_OUTID2 = 13
H4_INID2_ORIG = 856
H4_OUTID2_ORIG = 804
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 77.73252304939754
H4_P_Y = 104.52455535964528
H4_P_Z = 117.72909745001665
# Orientation:
H4_DX_X = 0.08075800052755255
H4_DX_Y = 0.49699430995703153
H4_DX_Z = -0.8639877321010658
H4_DY_X = 0.9902736297880494
H4_DY_Y = 0.05852329136989454
H4_DY_Z = 0.12622663155461566
H4_DZ_X = 0.1132973234334429
H4_DZ_Y = -0.8657780779377475
H4_DZ_Z = -0.48743413530982593
## Properties of helix 5
H5_INID = 1
H5_OUTID = 7
H5_INID2 = 3
H5_OUTID2 = 5
H5_INID2_ORIG = 552
H5_OUTID2_ORIG = 858
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 73.94353683582445
H5_P_Y = 121.57291959775189
H5_P_Z = 129.0158417717007
# Orientation:
H5_DX_X = -0.9689265978096273
H5_DX_Y = -0.1972020434140802
H5_DX_Z = -0.14930707327641812
H5_DY_X = -0.010012851254984412
H5_DY_Y = -0.5718647754835615
H5_DY_Z = 0.8202867921470443
H5_DZ_X = -0.24714568753432786
H5_DZ_Y = 0.796292680259242
H5_DZ_Z = 0.5521204365885524
#############  END of Description of junction: j9