#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 33:66:75:83:107:107:115:119:126:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.38033893625652
H1_P_Y = 45.13120059820008
H1_P_Z = 9.588738117136874
# Orientation:
H1_DX_X = -0.12220040767900286
H1_DX_Y = 0.8289135923155655
H1_DX_Z = 0.545865658232497
H1_DY_X = -0.9280494433476889
H1_DY_Y = 0.0995382489992096
H1_DY_Z = -0.35890997156417725
H1_DZ_X = -0.3518398656564017
H1_DZ_Y = -0.5504492651104869
H1_DZ_Z = 0.7571091833244434
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.7065042943218
H2_P_Y = 70.9829043942689
H2_P_Z = -0.005479782993463189
# Orientation:
H2_DX_X = 0.811475453724853
H2_DX_Y = -0.45998363767175476
H2_DX_Z = 0.36044783405688574
H2_DY_X = 0.35536055289517776
H2_DY_Y = -0.10124804221690908
H2_DY_Z = -0.9292296332948555
H2_DZ_X = 0.4639250644749495
H2_DZ_Y = 0.882135979892837
H2_DZ_Z = 0.08129973880903489
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 134.06572233736208
H3_P_Y = 50.1268150050433
H3_P_Z = -6.572618960228869
# Orientation:
H3_DX_X = 0.6189351361151694
H3_DX_Y = 0.4683038041010832
H3_DX_Z = -0.630563909803409
H3_DY_X = -0.20999078184465247
H3_DY_Y = -0.6749295337266972
H3_DY_Z = -0.707371186891109
H3_DZ_X = -0.7568508233611055
H3_DZ_Y = 0.5702294902650422
H3_DZ_Z = -0.3193981208612504
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.1307618131027
H4_P_Y = 38.381624966410016
H4_P_Z = -1.8360133530896965
# Orientation:
H4_DX_X = 0.429968533632632
H4_DX_Y = 0.6774060335590164
H4_DX_Z = 0.5968652492679243
H4_DY_X = -0.6372552111154448
H4_DY_Y = -0.24060073014610595
H4_DY_Z = 0.7321318764808493
H4_DZ_X = 0.639556765261716
H4_DZ_Y = -0.6951491597858706
H4_DZ_Z = 0.3282297817946782
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.40033856162435
H5_P_Y = 56.01164932636288
H5_P_Z = 11.37351034316055
# Orientation:
H5_DX_X = -0.40844479646662535
H5_DX_Y = 0.5571842453309372
H5_DX_Z = 0.7229927835008638
H5_DY_X = 0.2802949742253702
H5_DY_Y = -0.677243883607197
H5_DY_Z = 0.6802760098229577
H5_DZ_X = 0.8686815156680439
H5_DZ_Y = 0.4805064399897532
H5_DZ_Z = 0.12044079651440853
#############  END of Description of junction: j1