#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:65:74:81:107:109:116:119:127:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.51172792680417
H1_P_Y = 44.183145022859065
H1_P_Z = 8.687733054427472
# Orientation:
H1_DX_X = -0.12029966655258306
H1_DX_Y = 0.8073427325009348
H1_DX_Z = 0.5776899709232168
H1_DY_X = -0.941216185366784
H1_DY_Y = 0.0922741562147209
H1_DY_Z = -0.32495780110415495
H1_DZ_X = -0.3156581737115687
H1_DZ_Y = -0.5828234658734885
H1_DZ_Z = 0.7487834967440783
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.1811509924584
H2_P_Y = 70.35131648672294
H2_P_Z = -1.220589634463946
# Orientation:
H2_DX_X = 0.8286709617170516
H2_DX_Y = -0.4354440791570653
H2_DX_Z = 0.35170000161218473
H2_DY_X = 0.3516993610809038
H2_DY_Y = -0.0837483055050825
H2_DY_Z = -0.9323592551910036
H2_DZ_X = 0.43544459650135536
H2_DZ_Y = 0.8963117065240596
H2_DZ_Z = 0.08374561556093996
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 133.8423551638208
H3_P_Y = 49.667745702466895
H3_P_Z = -8.008469940518415
# Orientation:
H3_DX_X = 0.5851903978548023
H3_DX_Y = 0.4774645163148534
H3_DX_Z = -0.6554234004967885
H3_DY_X = -0.24511927435133885
H3_DY_Y = -0.6663022971428845
H3_DY_Z = -0.7042427068586328
H3_DZ_X = -0.7729610207507278
H3_DZ_Y = 0.5727729781356032
H3_DZ_Z = -0.2728779505889971
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 144.81031113323976
H4_P_Y = 37.70743461130796
H4_P_Z = -3.849689742081072
# Orientation:
H4_DX_X = 0.44055378952808155
H4_DX_Y = 0.6624581845065975
H4_DX_Z = 0.6058560161561957
H4_DY_X = -0.6190986091947366
H4_DY_Y = -0.264524636476267
H4_DY_Z = 0.7394211444029914
H4_DZ_X = 0.6500994313376793
H4_DZ_Y = -0.7008394041985042
H4_DZ_Z = 0.2935896096545578
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.3452797179646
H5_P_Y = 55.221751879346805
H5_P_Z = 9.891222757676482
# Orientation:
H5_DX_X = -0.3657525396048129
H5_DX_Y = 0.5518948745682266
H5_DX_Z = 0.7494245306886906
H5_DY_X = 0.30175138410368163
H5_DY_Y = -0.6914037484659232
H5_DY_Z = 0.6564350377598576
H5_DZ_X = 0.880438062537138
H5_DZ_Y = 0.466232671562814
H5_DZ_Z = 0.08634763461299855
#############  END of Description of junction: j1