#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:66:74:82:107:108:116:118:127:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.06457901226828
H1_P_Y = 44.82481198076521
H1_P_Z = 9.356173255980726
# Orientation:
H1_DX_X = -0.12931849878964385
H1_DX_Y = 0.8260368109928109
H1_DX_Z = 0.5485799055339324
H1_DY_X = -0.9300939315319425
H1_DY_Y = 0.09076821146838654
H1_DY_Z = -0.35593034475058793
H1_DZ_X = -0.3438051837861593
H1_DZ_Y = -0.5562592189543096
H1_DZ_Z = 0.7565538162815031
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.2693826478463
H2_P_Y = 70.66983178833377
H2_P_Z = -0.6219328216304332
# Orientation:
H2_DX_X = 0.8192841594382969
H2_DX_Y = -0.4328562013287467
H2_DX_Z = 0.3760438472635139
H2_DY_X = 0.3614224576654408
H2_DY_Y = -0.11928917422021357
H2_DY_Z = -0.924739909384759
H2_DZ_X = 0.44513736440401885
H2_DZ_Y = 0.8935354508272724
H2_DZ_Z = 0.05871222126887754
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 133.8473635463833
H3_P_Y = 50.23878804210525
H3_P_Z = -7.118910418106313
# Orientation:
H3_DX_X = 0.6060507862032694
H3_DX_Y = 0.4534194936560283
H3_DX_Z = -0.6535389868363639
H3_DY_X = -0.22614288694782658
H3_DY_Y = -0.689498144856266
H3_DY_Z = -0.6880782680209245
H3_DZ_X = -0.762602018896672
H3_DZ_Y = 0.5648035685196007
H3_DZ_Z = -0.31533329948204347
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.00911345998296
H4_P_Y = 38.29296651314006
H4_P_Z = -2.4223634199334496
# Orientation:
H4_DX_X = 0.4164383968832226
H4_DX_Y = 0.6776534485348051
H4_DX_Z = 0.6061063151710324
H4_DY_X = -0.6402965122913713
H4_DY_Y = -0.2546835837355701
H4_DY_Z = 0.7246769269978919
H4_DZ_X = 0.645445147126253
H4_DZ_Y = -0.6898710574190616
H4_DZ_Z = 0.3278391163157468
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.00014144393515
H5_P_Y = 55.99738898098594
H5_P_Z = 10.886195427514327
# Orientation:
H5_DX_X = -0.39654515129257106
H5_DX_Y = 0.5590900627239108
H5_DX_Z = 0.7281279041141886
H5_DY_X = 0.2728725798670837
H5_DY_Y = -0.6855205305175289
H5_DY_Z = 0.6749830793402474
H5_DZ_X = 0.8765229592789012
H5_DZ_Y = 0.4663474069857614
H5_DZ_Z = 0.11927949469471777
#############  END of Description of junction: j1