############# Start of Description of junction: j81 # Number of strands: NUM_STRANDS = 5 LILLEY = HS4HS8HS6HS9HS6 FINGERPRINT = 10:21:55:61:91:112:146:149:163:165 LOOP_LENGTH_SUM = 33 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2424 S1_NAME_ID3 = 2433 S1_NUM_ID5_ORIG = 2424 S1_NUM_ID3_ORIG = 2433 S1_NAME2_ID5 = 2425 S1_NAME2_ID3 = 2432 S1_NUM2_ID5_ORIG = 2425 S1_NUM2_ID3_ORIG = 2432 S1_SQ2 = GGAUAACA S1_SQLEN2 = 8 S1_SQ = GGGAUAACAG S1_SQLEN = 10 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2036 S2_NAME_ID3 = 2048 S2_NUM_ID5_ORIG = 2036 S2_NUM_ID3_ORIG = 2048 S2_NAME2_ID5 = 2037 S2_NAME2_ID3 = 2047 S2_NUM2_ID5_ORIG = 2037 S2_NUM2_ID3_ORIG = 2047 S2_SQ2 = ACGAAAAGACC S2_SQLEN2 = 11 S2_SQ = GACGAAAAGACCC S2_SQLEN = 13 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 2477 S3_NAME_ID3 = 2486 S3_NUM_ID5_ORIG = 2477 S3_NUM_ID3_ORIG = 2486 S3_NAME2_ID5 = 2478 S3_NAME2_ID3 = 2485 S3_NUM2_ID5_ORIG = 2478 S3_NUM2_ID3_ORIG = 2485 S3_SQ2 = CUCGAUGU S3_SQLEN2 = 8 S3_SQ = CCUCGAUGUC S3_SQLEN = 10 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2561 S4_NAME_ID3 = 2568 S4_NUM_ID5_ORIG = 2561 S4_NUM_ID3_ORIG = 2568 S4_NAME2_ID5 = 2562 S4_NAME2_ID3 = 2567 S4_NUM2_ID5_ORIG = 2562 S4_NUM2_ID3_ORIG = 2567 S4_SQ2 = GUUCAG S4_SQLEN2 = 6 S4_SQ = GGUUCAGA S4_SQLEN = 8 S4_CHAR = A ## Properties of strand 5 S5_NAME_ID5 = 2584 S5_NAME_ID3 = 2595 S5_NUM_ID5_ORIG = 2584 S5_NUM_ID3_ORIG = 2595 S5_NAME2_ID5 = 2585 S5_NAME2_ID3 = 2594 S5_NUM2_ID5_ORIG = 2585 S5_NUM2_ID3_ORIG = 2594 S5_SQ2 = CGGUCUCUAU S5_SQLEN2 = 10 S5_SQ = UCGGUCUCUAUC S5_SQLEN = 12 S5_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 13 H1_INID2 = 2 H1_OUTID2 = 12 H1_INID2_ORIG = 2425 H1_OUTID2_ORIG = 2047 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 48.301274485530136 H1_P_Y = 131.61966938497005 H1_P_Z = 103.49250513757427 # Orientation: H1_DX_X = 0.6995941051266286 H1_DX_Y = -0.43204734453050264 H1_DX_Z = -0.5691249249121029 H1_DY_X = -0.6788697322045465 H1_DY_Y = -0.15337961073655038 H1_DY_Z = -0.7180602911363678 H1_DZ_X = 0.22294388255477315 H1_DZ_Y = 0.8887124321705357 H1_DZ_Z = -0.40060733659900905 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 10 H2_INID2 = 2 H2_OUTID2 = 9 H2_INID2_ORIG = 2478 H2_OUTID2_ORIG = 2432 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 59.48233038449493 H2_P_Y = 110.44140034523339 H2_P_Z = 100.58253302971302 # Orientation: H2_DX_X = -0.39953494610540474 H2_DX_Y = -0.6216159416238156 H2_DX_Z = 0.6737695807616149 H2_DY_X = -0.6100107882617465 H2_DY_Y = -0.3683560474546965 H2_DY_Z = -0.7015701394071954 H2_DZ_X = 0.6842942824873148 H2_DZ_Y = -0.6913085009043982 H2_DZ_Z = -0.23202131697860295 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 10 H3_INID2 = 2 H3_OUTID2 = 9 H3_INID2_ORIG = 2562 H3_OUTID2_ORIG = 2485 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 56.5365718085438 H3_P_Y = 116.72836733756283 H3_P_Z = 125.46340448880943 # Orientation: H3_DX_X = 0.5910996672221884 H3_DX_Y = -0.2984284258529044 H3_DX_Z = -0.7493608330122328 H3_DY_X = 0.8059904217095095 H3_DY_Y = 0.2546008846690597 H3_DY_Z = 0.5343761125258624 H3_DZ_X = 0.03131490894677569 H3_DZ_Y = -0.9198471960976491 H3_DZ_Z = 0.39102495100563317 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 8 H4_INID2 = 2 H4_OUTID2 = 7 H4_INID2_ORIG = 2585 H4_OUTID2_ORIG = 2567 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 65.36736299919012 H4_P_Y = 136.56132334918533 H4_P_Z = 118.79243037566022 # Orientation: H4_DX_X = -0.2864812164448125 H4_DX_Y = 0.7206498943695578 H4_DX_Z = 0.6313416209703178 H4_DY_X = 0.82801063744256 H4_DY_Y = -0.14528752451545301 H4_DY_Z = 0.5415624797769425 H4_DZ_X = 0.4820030050801165 H4_DZ_Y = 0.6779050560110136 H4_DZ_Z = -0.5550836316524084 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 12 H5_INID2 = 2 H5_OUTID2 = 11 H5_INID2_ORIG = 2037 H5_OUTID2_ORIG = 2594 H5_INSEQ_CHAR = A H5_OUTSEQ_CHAR = A # Position: H5_P_X = 38.83038898770181 H5_P_Y = 103.23182658401267 H5_P_Z = 125.43646379314923 # Orientation: H5_DX_X = -0.7649264265535152 H5_DX_Y = -0.3677492151666115 H5_DX_Z = -0.5288176214011884 H5_DY_X = 0.6432922228295581 H5_DY_Y = -0.3946129771118052 H5_DY_Z = -0.6560912393424871 H5_DZ_X = 0.03259874241558691 H5_DZ_Y = -0.8420457903459209 H5_DZ_Z = 0.5384201045221317 ############# END of Description of junction: j81