############# Start of Description of junction: j42 # Number of strands: NUM_STRANDS = 5 LILLEY = HS7HS8HS8HS9HS11 FINGERPRINT = 19:27:28:45:111:129:131:150:156:171 LOOP_LENGTH_SUM = 43 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2479 S1_NAME_ID3 = 2492 S1_NUM_ID5_ORIG = 2479 S1_NUM_ID3_ORIG = 2492 S1_NAME2_ID5 = 2481 S1_NAME2_ID3 = 2490 S1_NUM2_ID5_ORIG = 2481 S1_NUM2_ID3_ORIG = 2490 S1_SQ2 = GGAUAACAGA S1_SQLEN2 = 10 S1_SQ = AGGGAUAACAGAGU S1_SQLEN = 14 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2093 S2_NAME_ID3 = 2107 S2_NUM_ID5_ORIG = 2093 S2_NUM_ID3_ORIG = 2107 S2_NAME2_ID5 = 2095 S2_NAME2_ID3 = 2105 S2_NUM2_ID5_ORIG = 2095 S2_NUM2_ID3_ORIG = 2105 S2_SQ2 = AAGCGAAGACC S2_SQLEN2 = 11 S2_SQ = GGAAGCGAAGACCCU S2_SQLEN = 15 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 2529 S3_NAME_ID3 = 2545 S3_NUM_ID5_ORIG = 2529 S3_NUM_ID3_ORIG = 2545 S3_NAME2_ID5 = 2531 S3_NAME2_ID3 = 2543 S3_NUM2_ID5_ORIG = 2531 S3_NUM2_ID3_ORIG = 2543 S3_SQ2 = UACCUCGAUGUCG S3_SQLEN2 = 13 S3_SQ = GCUACCUCGAUGUCGGU S3_SQLEN = 17 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2613 S4_NAME_ID3 = 2625 S4_NUM_ID5_ORIG = 2613 S4_NUM_ID3_ORIG = 2625 S4_NAME2_ID5 = 2615 S4_NAME2_ID3 = 2623 S4_NUM2_ID5_ORIG = 2615 S4_NUM2_ID3_ORIG = 2623 S4_SQ2 = UGGGUUUAG S4_SQLEN2 = 9 S4_SQ = GCUGGGUUUAGAC S4_SQLEN = 13 S4_CHAR = A ## Properties of strand 5 S5_NAME_ID5 = 2639 S5_NAME_ID3 = 2652 S5_NUM_ID5_ORIG = 2639 S5_NUM_ID3_ORIG = 2652 S5_NAME2_ID5 = 2641 S5_NAME2_ID3 = 2650 S5_NUM2_ID5_ORIG = 2641 S5_NUM2_ID3_ORIG = 2650 S5_SQ2 = CGGCUGCUAU S5_SQLEN2 = 10 S5_SQ = GUCGGCUGCUAUCU S5_SQLEN = 14 S5_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 15 H1_INID2 = 3 H1_OUTID2 = 13 H1_INID2_ORIG = 2481 H1_OUTID2_ORIG = 2105 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 71.7694866749019 H1_P_Y = 113.58259082108155 H1_P_Z = 83.22131486805597 # Orientation: H1_DX_X = -0.39218229316304587 H1_DX_Y = -0.8825405964746125 H1_DX_Z = 0.25945162266518196 H1_DY_X = -0.6773954349823441 H1_DY_Y = 0.08625260368806664 H1_DY_Z = -0.7305449425066968 H1_DZ_X = 0.6223571913254062 H1_DZ_Y = -0.4622581356030935 H1_DZ_Z = -0.6316557151441771 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 14 H2_INID2 = 3 H2_OUTID2 = 12 H2_INID2_ORIG = 2531 H2_OUTID2_ORIG = 2490 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 64.16954584269598 H2_P_Y = 109.23766107486001 H2_P_Z = 115.33298190718406 # Orientation: H2_DX_X = -0.5803684184090727 H2_DX_Y = -0.8103972144713367 H2_DX_Z = -0.08018013276651459 H2_DY_X = 0.8133014749632821 H2_DY_Y = -0.5818063324234259 H2_DY_Z = -0.006488634260449544 H2_DZ_X = -0.04139093784770864 H2_DZ_Y = -0.06897641864512138 H2_DZ_Z = 0.9967592708046311 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 17 H3_INID2 = 3 H3_OUTID2 = 15 H3_INID2_ORIG = 2615 H3_OUTID2_ORIG = 2543 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 64.98161299137519 H3_P_Y = 131.04646630710647 H3_P_Z = 114.4663965282168 # Orientation: H3_DX_X = 0.7306849557493109 H3_DX_Y = 0.5501607192366578 H3_DX_Z = 0.4042557092369208 H3_DY_X = -0.46695098214752306 H3_DY_Y = 0.8346975950661033 H3_DY_Z = -0.29195325835199526 H3_DZ_X = -0.4980524828902162 H3_DZ_Y = 0.024558253192878965 H3_DZ_Z = 0.8667990635014604 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 13 H4_INID2 = 3 H4_OUTID2 = 11 H4_INID2_ORIG = 2641 H4_OUTID2_ORIG = 2623 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 91.70729635815017 H4_P_Y = 119.81885495062674 H4_P_Z = 94.72933478618388 # Orientation: H4_DX_X = 0.7027083312681413 H4_DX_Y = 0.7059756817988614 H4_DX_Z = -0.08831386003886621 H4_DY_X = 0.32635731901015674 H4_DY_Y = -0.20954355569378436 H4_DY_Z = 0.9217279417462123 H4_DZ_X = 0.632211911857766 H4_DZ_Y = -0.6765277784214305 H4_DZ_Z = -0.37764833314781754 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 14 H5_INID2 = 3 H5_OUTID2 = 12 H5_INID2_ORIG = 2095 H5_OUTID2_ORIG = 2650 H5_INSEQ_CHAR = A H5_OUTSEQ_CHAR = A # Position: H5_P_X = 48.86107111121054 H5_P_Y = 141.41639310439663 H5_P_Z = 107.58483312951807 # Orientation: H5_DX_X = -0.7441414783066378 H5_DX_Y = -0.6630673666803375 H5_DX_Z = -0.08121039038942968 H5_DY_X = 0.439268834527752 H5_DY_Y = -0.5772823746172264 H5_DY_Z = 0.6883225631700043 H5_DZ_X = -0.5032855563953831 H5_DZ_Y = 0.476536176171237 H5_DZ_Z = 0.7208445890231019 ############# END of Description of junction: j42