#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 2
LILLEY = HS1HS3
FINGERPRINT = 120
LOOP_LENGTH_SUM = 4
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  4
S1_NAME_ID3 = 12
S1_NUM_ID5_ORIG =  4
S1_NUM_ID3_ORIG = 12
S1_NAME2_ID5 =  6
S1_NAME2_ID3 = 10
S1_NUM2_ID5_ORIG =  6
S1_NUM2_ID3_ORIG = 10
S1_SQ2 = CGAGC
S1_SQLEN2 = 5
S1_SQ = ACCGAGCCA
S1_SQLEN = 9
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  21
S2_NAME_ID3 = 27
S2_NUM_ID5_ORIG =  21
S2_NUM_ID3_ORIG = 27
S2_NAME2_ID5 =  23
S2_NAME2_ID3 = 25
S2_NUM2_ID5_ORIG =  23
S2_NUM2_ID3_ORIG = 25
S2_SQ2 = GGA
S2_SQLEN2 = 3
S2_SQ = UGGGAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 6
H1_OUTID2_ORIG = 25
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 10.514872986054526
H1_P_Y = 3.4060269674116928
H1_P_Z = 0.5036014866228791
# Orientation:
H1_DX_X = -0.4751891775794608
H1_DX_Y = -0.7262521268287183
H1_DX_Z = -0.49674248236698937
H1_DY_X = 0.7658565746703658
H1_DY_Y = -0.0634408725934521
H1_DY_Z = -0.6398741772557766
H1_DZ_X = 0.4331962055991845
H1_DZ_Y = -0.6844947800833436
H1_DZ_Z = 0.5863513822727153
## Properties of helix 2
H2_INID = 1
H2_OUTID = 9
H2_INID2 = 3
H2_OUTID2 = 7
H2_INID2_ORIG = 23
H2_OUTID2_ORIG = 10
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -4.694274142932025
H2_P_Y = 22.165399099099712
H2_P_Z = 0.6309704974032346
# Orientation:
H2_DX_X = 0.006643109892826793
H2_DX_Y = -0.520097349959812
H2_DX_Z = 0.8540811528512573
H2_DY_X = 0.6491084507264935
H2_DY_Y = 0.651942719890851
H2_DY_Z = 0.3919552387413292
H2_DZ_X = -0.7606668707695912
H2_DZ_Y = 0.5517874921979491
H2_DZ_Z = 0.3419305121914331
#############  END of Description of junction: j1