#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 2HS12HS1
FINGERPRINT = 39:53:133:135:172:172
LOOP_LENGTH_SUM = 2
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  5
S1_NAME_ID3 = 11
S1_NUM_ID5_ORIG =  5
S1_NUM_ID3_ORIG = 11
S1_NAME2_ID5 =  7
S1_NAME2_ID3 = 9
S1_NUM2_ID5_ORIG =  7
S1_NUM2_ID3_ORIG = 9
S1_SQ2 = CUG
S1_SQLEN2 = 3
S1_SQ = ACCUGAC
S1_SQLEN = 7
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  82
S2_NAME_ID3 = 87
S2_NUM_ID5_ORIG =  82
S2_NUM_ID3_ORIG = 87
S2_NAME2_ID5 =  84
S2_NAME2_ID3 = 85
S2_NUM2_ID5_ORIG =  84
S2_NUM2_ID3_ORIG = 85
S2_SQ2 = UG
S2_SQLEN2 = 2
S2_SQ = CGUGGU
S2_SQLEN = 6
S2_CHAR = B
## Properties of strand 3
S3_NAME_ID5 =  11
S3_NAME_ID3 = 17
S3_NUM_ID5_ORIG =  11
S3_NUM_ID3_ORIG = 17
S3_NAME2_ID5 =  13
S3_NAME2_ID3 = 15
S3_NUM2_ID5_ORIG =  13
S3_NUM2_ID3_ORIG = 15
S3_SQ2 = CAA
S3_SQLEN2 = 3
S3_SQ = GUCAACC
S3_SQLEN = 7
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  66
S4_NAME_ID3 = 71
S4_NUM_ID5_ORIG =  66
S4_NUM_ID3_ORIG = 71
S4_NAME2_ID5 =  68
S4_NAME2_ID3 = 69
S4_NUM2_ID5_ORIG =  68
S4_NUM2_ID3_ORIG = 69
S4_SQ2 = UA
S4_SQLEN2 = 2
S4_SQ = GGUACG
S4_SQLEN = 6
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 3
H1_OUTID2 = 4
H1_INID2_ORIG = 7
H1_OUTID2_ORIG = 85
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 105.26617665373134
H1_P_Y = 34.57017358477467
H1_P_Z = 41.264446675789564
# Orientation:
H1_DX_X = 0.1376588007710211
H1_DX_Y = 0.5666116569748922
H1_DX_Z = -0.8124046311724555
H1_DY_X = -0.5477273463305181
H1_DY_Y = 0.7269381567103252
H1_DY_Z = 0.41419279375713813
H1_DZ_X = 0.825254390265215
H1_DZ_Y = 0.3879589495020994
H1_DZ_Z = 0.41041813416223505
## Properties of helix 2
H2_INID = 1
H2_OUTID = 7
H2_INID2 = 3
H2_OUTID2 = 5
H2_INID2_ORIG = 13
H2_OUTID2_ORIG = 9
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 86.91799398023726
H2_P_Y = 28.730252663445675
H2_P_Z = 33.92085040651859
# Orientation:
H2_DX_X = 0.3580750385297904
H2_DX_Y = -0.9139535316993666
H2_DX_Z = -0.19097436654210043
H2_DY_X = -0.28417451291012696
H2_DY_Y = -0.3015111923714109
H2_DY_Z = 0.910129577086181
H2_DZ_X = -0.8893970502504374
H2_DZ_Y = -0.2716246357918024
H2_DZ_Z = -0.3676859315187144
## Properties of helix 3
H3_INID = 1
H3_OUTID = 7
H3_INID2 = 3
H3_OUTID2 = 5
H3_INID2_ORIG = 68
H3_OUTID2_ORIG = 15
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 101.95896558966442
H3_P_Y = 14.031866429780388
H3_P_Z = 33.91284191968134
# Orientation:
H3_DX_X = -0.2622063121805098
H3_DX_Y = 0.06387091303222014
H3_DX_Z = -0.962895817999609
H3_DY_X = 0.02198020798734035
H3_DY_Y = -0.9971531077656817
H3_DY_Z = -0.07212870531260762
H3_DZ_X = -0.9647614836370337
H3_DZ_Y = -0.04007725217214819
H3_DZ_Z = 0.2600559431137839
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 84
H4_OUTID2_ORIG = 69
H4_INSEQ_CHAR = B
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 118.2427416309321
H4_P_Y = 12.816404512615893
H4_P_Z = 28.399920088189127
# Orientation:
H4_DX_X = 0.001956064535107771
H4_DX_Y = 0.9860966264422348
H4_DX_Z = -0.16616141889976177
H4_DY_X = 0.3526252293908243
H4_DY_Y = 0.15480806398122482
H4_DY_Z = 0.9228704735354043
H4_DZ_X = 0.9357625881646499
H4_DZ_Y = -0.06039790265921141
H4_DZ_Z = -0.34741973453699515
#############  END of Description of junction: j1