############# Start of Description of junction: j42 # Number of strands: NUM_STRANDS = 5 LILLEY = HS7HS8HS8HS9HS11 FINGERPRINT = 20:24:29:45:109:127:131:151:154:171 LOOP_LENGTH_SUM = 43 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2479 S1_NAME_ID3 = 2492 S1_NUM_ID5_ORIG = 2479 S1_NUM_ID3_ORIG = 2492 S1_NAME2_ID5 = 2481 S1_NAME2_ID3 = 2490 S1_NUM2_ID5_ORIG = 2481 S1_NUM2_ID3_ORIG = 2490 S1_SQ2 = GGAUAACAGA S1_SQLEN2 = 10 S1_SQ = AGGGAUAACAGAGU S1_SQLEN = 14 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2093 S2_NAME_ID3 = 2107 S2_NUM_ID5_ORIG = 2093 S2_NUM_ID3_ORIG = 2107 S2_NAME2_ID5 = 2095 S2_NAME2_ID3 = 2105 S2_NUM2_ID5_ORIG = 2095 S2_NUM2_ID3_ORIG = 2105 S2_SQ2 = AAGCGAAGACC S2_SQLEN2 = 11 S2_SQ = GGAAGCGAAGACCCU S2_SQLEN = 15 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 2529 S3_NAME_ID3 = 2545 S3_NUM_ID5_ORIG = 2529 S3_NUM_ID3_ORIG = 2545 S3_NAME2_ID5 = 2531 S3_NAME2_ID3 = 2543 S3_NUM2_ID5_ORIG = 2531 S3_NUM2_ID3_ORIG = 2543 S3_SQ2 = UACCUCGAUGUCG S3_SQLEN2 = 13 S3_SQ = GCUACCUCGAUGUCGGU S3_SQLEN = 17 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2613 S4_NAME_ID3 = 2625 S4_NUM_ID5_ORIG = 2613 S4_NUM_ID3_ORIG = 2625 S4_NAME2_ID5 = 2615 S4_NAME2_ID3 = 2623 S4_NUM2_ID5_ORIG = 2615 S4_NUM2_ID3_ORIG = 2623 S4_SQ2 = UGGGUUUAG S4_SQLEN2 = 9 S4_SQ = GCUGGGUUUAGAC S4_SQLEN = 13 S4_CHAR = A ## Properties of strand 5 S5_NAME_ID5 = 2639 S5_NAME_ID3 = 2652 S5_NUM_ID5_ORIG = 2639 S5_NUM_ID3_ORIG = 2652 S5_NAME2_ID5 = 2641 S5_NAME2_ID3 = 2650 S5_NUM2_ID5_ORIG = 2641 S5_NUM2_ID3_ORIG = 2650 S5_SQ2 = CGGCUGCUAU S5_SQLEN2 = 10 S5_SQ = GUCGGCUGCUAUCU S5_SQLEN = 14 S5_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 15 H1_INID2 = 3 H1_OUTID2 = 13 H1_INID2_ORIG = 2481 H1_OUTID2_ORIG = 2105 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 71.09002363862052 H1_P_Y = 112.794009869434 H1_P_Z = 82.73405667904207 # Orientation: H1_DX_X = -0.39018891854641424 H1_DX_Y = -0.8792557493544564 H1_DX_Z = 0.2732433623543926 H1_DY_X = -0.672036513131971 H1_DY_Y = 0.06910685307114761 H1_DY_Z = -0.7372863540552146 H1_DZ_X = 0.6293802768287406 H1_DZ_Y = -0.47131048162093236 H1_DZ_Z = -0.6178566962113763 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 14 H2_INID2 = 3 H2_OUTID2 = 12 H2_INID2_ORIG = 2531 H2_OUTID2_ORIG = 2490 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 63.292726248871276 H2_P_Y = 108.08116520130756 H2_P_Z = 115.35240819883613 # Orientation: H2_DX_X = -0.5747257157066628 H2_DX_Y = -0.8091456452566916 H2_DX_Z = -0.12236697457892376 H2_DY_X = 0.8163432213397783 H2_DY_Y = -0.5773286877504518 H2_DY_Z = -0.016593109200726985 H2_DZ_X = -0.05721972280661447 H2_DZ_Y = -0.10942993677456059 H2_DZ_Z = 0.9923462058472552 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 17 H3_INID2 = 3 H3_OUTID2 = 15 H3_INID2_ORIG = 2615 H3_OUTID2_ORIG = 2543 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 64.24670348075624 H3_P_Y = 130.28541276831618 H3_P_Z = 113.96422268305177 # Orientation: H3_DX_X = 0.7343289144996703 H3_DX_Y = 0.5388243428042188 H3_DX_Z = 0.4128309253572695 H3_DY_X = -0.44476773823566873 H3_DY_Y = 0.8413783148266418 H3_DY_Z = -0.30702473901008887 H3_DZ_X = -0.5127793915071663 H3_DZ_Y = 0.04184326637692948 H3_DZ_Z = 0.8575001088655654 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 13 H4_INID2 = 3 H4_OUTID2 = 11 H4_INID2_ORIG = 2641 H4_OUTID2_ORIG = 2623 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 90.80891155538455 H4_P_Y = 119.15156212939728 H4_P_Z = 94.4633509582392 # Orientation: H4_DX_X = 0.7338303479650392 H4_DX_Y = 0.670436367038576 H4_DX_Z = -0.10958146813050007 H4_DY_X = 0.32401119361021813 H4_DY_Y = -0.20364287668543568 H4_DY_Z = 0.9238757087349683 H4_DZ_X = 0.5970843883579562 H4_DZ_Y = -0.7134736551039538 H4_DZ_Z = -0.36666821058254584 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 14 H5_INID2 = 3 H5_OUTID2 = 12 H5_INID2_ORIG = 2095 H5_OUTID2_ORIG = 2650 H5_INSEQ_CHAR = A H5_OUTSEQ_CHAR = A # Position: H5_P_X = 48.1759362872631 H5_P_Y = 140.34075259083312 H5_P_Z = 107.71458655882893 # Orientation: H5_DX_X = -0.7325277345998344 H5_DX_Y = -0.6675167830173905 H5_DX_Z = -0.13350828600565023 H5_DY_X = 0.42553359284798375 H5_DY_Y = -0.6020970589418368 H5_DY_Z = 0.6755740469937308 H5_DZ_X = -0.5313419608876728 H5_DZ_Y = 0.4380644655797994 H5_DZ_Z = 0.7251036095595822 ############# END of Description of junction: j42