#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 38:65:73:80:107:109:117:119:127:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 97.35652686275527
H1_P_Y = 125.6390204259658
H1_P_Z = 147.4479831037542
# Orientation:
H1_DX_X = -0.9898019997528849
H1_DX_Y = 0.06216685056851645
H1_DX_Z = -0.12816896650744525
H1_DY_X = -0.13043053032193086
H1_DY_Y = -0.03378180399680275
H1_DY_Z = 0.9908817621082164
H1_DZ_X = 0.05727021953101996
H1_DZ_Y = 0.9974938959257429
H1_DZ_Z = 0.04154575243939007
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 84.85594862105359
H2_P_Y = 98.60212842379347
H2_P_Z = 135.57613577409543
# Orientation:
H2_DX_X = 0.38623354851630154
H2_DX_Y = 0.24695916564378706
H2_DX_Z = -0.8887265138978364
H2_DY_X = 0.5943296593062541
H2_DY_Y = -0.803458416879991
H2_DY_Z = 0.03502611045510662
H2_DZ_X = -0.7054047788818991
H2_DZ_Y = -0.5417247851531357
H2_DZ_Z = -0.45709775221646964
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 105.34102607039516
H3_P_Y = 104.05699730875388
H3_P_Z = 136.5518104522437
# Orientation:
H3_DX_X = 0.051567473706100486
H3_DX_Y = -0.9488919792002406
H3_DX_Z = -0.311359611165301
H3_DY_X = 0.8450656902842013
H3_DY_Y = -0.12467702431474947
H3_DY_Z = 0.5199227045556825
H3_DZ_X = -0.5321698739688827
H3_DZ_Y = -0.28993042513239686
H3_DZ_Z = 0.7954467762349111
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 116.46276296409808
H4_P_Y = 112.03429471699913
H4_P_Z = 125.47083756321472
# Orientation:
H4_DX_X = -0.7589568805041722
H4_DX_Y = -0.008180181617177595
H4_DX_Z = -0.6510895008861013
H4_DY_X = -0.28244525894389483
H4_DY_Y = 0.9050884656014091
H4_DY_Z = 0.3178671815954033
H4_DZ_X = 0.5866933860505839
H4_DZ_Y = 0.42514462723171675
H4_DZ_Z = -0.6892335719482219
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 94.00741321506811
H5_P_Y = 112.03251958825864
H5_P_Z = 123.05485592716452
# Orientation:
H5_DX_X = -0.920115816261756
H5_DX_Y = 0.38917646533052164
H5_DX_Z = 0.043915412987018954
H5_DY_X = 0.3209086618570609
H5_DY_Y = 0.8134514420155199
H5_DY_Z = -0.48509213787485805
H5_DZ_X = -0.2245094995987671
H5_DZ_Y = -0.4322481119863113
H5_DZ_Z = -0.8733596362748699
#############  END of Description of junction: j1