#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 35:65:73:83:107:108:117:117:127:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -4.27564408222602
H1_P_Y = 92.2925302971732
H1_P_Z = -35.53382452035122
# Orientation:
H1_DX_X = -0.9437387275381415
H1_DX_Y = 0.3019265585199804
H1_DX_Z = 0.1348983595340485
H1_DY_X = 0.32982677363588975
H1_DY_Y = 0.8888823513935193
H1_DY_Z = 0.31796613777892446
H1_DZ_X = -0.023906349316274778
H1_DZ_Y = 0.34457004896158594
H1_DZ_Z = -0.9384561619068705
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -19.458525477401473
H2_P_Y = 78.70429466408001
H2_P_Z = -10.864735799289642
# Orientation:
H2_DX_X = -0.06631960451645114
H2_DX_Y = -0.8118184106612887
H2_DX_Z = -0.5801315179923936
H2_DY_X = 0.6253407048862272
H2_DY_Y = -0.4868782906366249
H2_DY_Z = 0.6098348406897944
H2_DZ_X = -0.7775285929592428
H2_DZ_Y = -0.3223358469331856
H2_DZ_Z = 0.5399526728452155
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -0.67589016358128
H3_P_Y = 72.59916254826136
H3_P_Z = -19.876320114687232
# Orientation:
H3_DX_X = -0.016125664521340233
H3_DX_Y = -0.6193809471326972
H3_DX_Z = 0.7849249679254342
H3_DY_X = 0.9985755344189218
H3_DY_Y = 0.029956339393379494
H3_DY_Z = 0.04415336669051584
H3_DZ_X = -0.050861232817376534
H3_DZ_Y = 0.7845188717036393
H3_DZ_Z = 0.61801559441259
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 2.903986586214721
H4_P_Y = 60.80119275883753
H4_P_Z = -31.641487678288534
# Orientation:
H4_DX_X = -0.9672521233585998
H4_DX_Y = -0.25337656136392894
H4_DX_Z = 0.014954865752546453
H4_DY_X = -0.18977762751111138
H4_DY_Y = 0.6828260888632158
H4_DY_Z = -0.7055019379590775
H4_DZ_X = 0.16854608258437187
H4_DZ_Y = -0.6852363464667874
H4_DZ_Z = -0.7085501870201654
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = -18.575403760573412
H5_P_Y = 67.6279931603573
H5_P_Z = -29.261942902891864
# Orientation:
H5_DX_X = -0.8125129540890192
H5_DX_Y = 0.5567076565478573
H5_DX_Z = -0.1729140959509472
H5_DY_X = 0.015174488934729169
H5_DY_Y = -0.2763235624044569
H5_DY_Z = -0.9609448598882651
H5_DZ_X = -0.5827456000032107
H5_DZ_Y = -0.7834040298601366
H5_DZ_Z = 0.2160687197994804
#############  END of Description of junction: j1