############# Start of Description of junction: j40 # Number of strands: NUM_STRANDS = 5 LILLEY = HS7HS8HS8HS9HS11 FINGERPRINT = 19:26:30:47:108:126:131:150:155:172 LOOP_LENGTH_SUM = 43 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2479 S1_NAME_ID3 = 2492 S1_NUM_ID5_ORIG = 2479 S1_NUM_ID3_ORIG = 2492 S1_NAME2_ID5 = 2481 S1_NAME2_ID3 = 2490 S1_NUM2_ID5_ORIG = 2481 S1_NUM2_ID3_ORIG = 2490 S1_SQ2 = GGAUAACAGA S1_SQLEN2 = 10 S1_SQ = AGGGAUAACAGAGU S1_SQLEN = 14 S1_CHAR = 3 ## Properties of strand 2 S2_NAME_ID5 = 2093 S2_NAME_ID3 = 2107 S2_NUM_ID5_ORIG = 2093 S2_NUM_ID3_ORIG = 2107 S2_NAME2_ID5 = 2095 S2_NAME2_ID3 = 2105 S2_NUM2_ID5_ORIG = 2095 S2_NUM2_ID3_ORIG = 2105 S2_SQ2 = AAGCGAAGACC S2_SQLEN2 = 11 S2_SQ = GGAAGCGAAGACCCU S2_SQLEN = 15 S2_CHAR = 3 ## Properties of strand 3 S3_NAME_ID5 = 2529 S3_NAME_ID3 = 2545 S3_NUM_ID5_ORIG = 2529 S3_NUM_ID3_ORIG = 2545 S3_NAME2_ID5 = 2531 S3_NAME2_ID3 = 2543 S3_NUM2_ID5_ORIG = 2531 S3_NUM2_ID3_ORIG = 2543 S3_SQ2 = UACCUCGAUGUCG S3_SQLEN2 = 13 S3_SQ = GCUACCUCGAUGUCGGU S3_SQLEN = 17 S3_CHAR = 3 ## Properties of strand 4 S4_NAME_ID5 = 2613 S4_NAME_ID3 = 2625 S4_NUM_ID5_ORIG = 2613 S4_NUM_ID3_ORIG = 2625 S4_NAME2_ID5 = 2615 S4_NAME2_ID3 = 2623 S4_NUM2_ID5_ORIG = 2615 S4_NUM2_ID3_ORIG = 2623 S4_SQ2 = UGGGUUUAG S4_SQLEN2 = 9 S4_SQ = GCUGGGUUUAGAC S4_SQLEN = 13 S4_CHAR = 3 ## Properties of strand 5 S5_NAME_ID5 = 2639 S5_NAME_ID3 = 2652 S5_NUM_ID5_ORIG = 2639 S5_NUM_ID3_ORIG = 2652 S5_NAME2_ID5 = 2641 S5_NAME2_ID3 = 2650 S5_NUM2_ID5_ORIG = 2641 S5_NUM2_ID3_ORIG = 2650 S5_SQ2 = CGGCUGCUAU S5_SQLEN2 = 10 S5_SQ = GUCGGCUGCUAUCU S5_SQLEN = 14 S5_CHAR = 3 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 15 H1_INID2 = 3 H1_OUTID2 = 13 H1_INID2_ORIG = 2481 H1_OUTID2_ORIG = 2105 H1_INSEQ_CHAR = 3 H1_OUTSEQ_CHAR = 3 # Position: H1_P_X = 19.455329123688482 H1_P_Y = -25.098543492683504 H1_P_Z = -4.715258708708745 # Orientation: H1_DX_X = -0.44004842584412174 H1_DX_Y = -0.6690282879444993 H1_DX_Z = -0.5989645505722025 H1_DY_X = 0.7734824235914353 H1_DY_Y = -0.6212392928660542 H1_DY_Z = 0.12564506116201102 H1_DZ_X = -0.4561604140072113 H1_DZ_Y = -0.4079986408425107 H1_DZ_Z = 0.7908569945087631 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 14 H2_INID2 = 3 H2_OUTID2 = 12 H2_INID2_ORIG = 2531 H2_OUTID2_ORIG = 2490 H2_INSEQ_CHAR = 3 H2_OUTSEQ_CHAR = 3 # Position: H2_P_X = 10.599929640221488 H2_P_Y = -13.090008085274615 H2_P_Z = -36.26871190873824 # Orientation: H2_DX_X = -0.04619545873842945 H2_DX_Y = -0.8904151070566844 H2_DX_Z = -0.4527989804727639 H2_DY_X = -0.8873711163501454 H2_DY_Y = -0.1715808782758259 H2_DY_Z = 0.42793983698365423 H2_DZ_X = -0.4587357425135341 H2_DZ_Y = 0.4215696138662359 H2_DZ_Z = -0.7822023901812329 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 17 H3_INID2 = 3 H3_OUTID2 = 15 H3_INID2_ORIG = 2615 H3_OUTID2_ORIG = 2543 H3_INSEQ_CHAR = 3 H3_OUTSEQ_CHAR = 3 # Position: H3_P_X = 23.14469695365394 H3_P_Y = 1.5970633945930768 H3_P_Z = -28.433465994919825 # Orientation: H3_DX_X = -0.24823620582384365 H3_DX_Y = 0.9352935467763315 H3_DX_Z = 0.25219985621869156 H3_DY_X = 0.9686504809409229 H3_DY_Y = 0.24228354576477273 H3_DY_Z = 0.05490837117024583 H3_DZ_X = -0.00974843018649807 H3_DZ_Y = 0.2579237577467368 H3_DZ_Z = -0.966116092040032 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 13 H4_INID2 = 3 H4_OUTID2 = 11 H4_INID2_ORIG = 2641 H4_OUTID2_ORIG = 2623 H4_INSEQ_CHAR = 3 H4_OUTSEQ_CHAR = 3 # Position: H4_P_X = 6.60496493148184 H4_P_Y = -5.6622358539547335 H4_P_Z = 1.3063448408289453 # Orientation: H4_DX_X = 0.08839919806214702 H4_DX_Y = 0.7540098024935862 H4_DX_Z = 0.6508877011632275 H4_DY_X = -0.7034349774791018 H4_DY_Y = 0.509903928785743 H4_DY_Z = -0.4951537295303753 H4_DZ_X = -0.7052409618286113 H4_DZ_Y = -0.414085982801212 H4_DZ_Z = 0.5754719668294968 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 14 H5_INID2 = 3 H5_OUTID2 = 12 H5_INID2_ORIG = 2095 H5_OUTID2_ORIG = 2650 H5_INSEQ_CHAR = 3 H5_OUTSEQ_CHAR = 3 # Position: H5_P_X = 42.656051038277454 H5_P_Y = -1.354893349063489 H5_P_Z = -32.867218632582635 # Orientation: H5_DX_X = 0.05548513065511429 H5_DX_Y = -0.8578200784465269 H5_DX_Z = -0.5109462919820231 H5_DY_X = -0.9390541434974793 H5_DY_Y = 0.12904648748223924 H5_DY_Z = -0.3186288117052669 H5_DZ_X = 0.33926201652469246 H5_DZ_Y = 0.49748539383834267 H5_DZ_Z = -0.7983793378220057 ############# END of Description of junction: j40