#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 34:64:73:82:106:108:116:116:126:171
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AC
S3_SQLEN2 = 2
S3_SQ = ACACUG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = CAGACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -15.98165475911655
H1_P_Y = 72.40858985317624
H1_P_Z = -145.1645314768247
# Orientation:
H1_DX_X = 0.29901904157910586
H1_DX_Y = -0.6984802725649217
H1_DX_Z = 0.6501637652243915
H1_DY_X = -0.9540390405548766
H1_DY_Y = -0.23305385734953177
H1_DY_Z = 0.18840225229976681
H1_DZ_X = 0.019927916856246952
H1_DZ_Y = -0.6766174756922396
H1_DZ_Z = -0.7360649901453087
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -3.3723352632884143
H2_P_Y = 83.10035194074332
H2_P_Z = -117.77078998096584
# Orientation:
H2_DX_X = 0.7839105577099486
H2_DX_Y = 0.28197720462299003
H2_DX_Z = -0.5531483468147513
H2_DY_X = -0.23292787494158018
H2_DY_Y = 0.9594118227853983
H2_DY_Z = 0.15897660008569403
H2_DZ_X = 0.5755248409808926
H2_DZ_Y = 0.004220233715003019
H2_DZ_Z = 0.8177734081280192
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -8.512983106807162
H3_P_Y = 94.37078858354587
H3_P_Z = -136.09398746078077
# Orientation:
H3_DX_X = 0.29083378088231804
H3_DX_Y = 0.7364464028387516
H3_DX_Z = 0.6107883493023962
H3_DY_X = -0.6512918936009733
H3_DY_Y = 0.6200309761921545
H3_DY_Z = -0.4374705223119122
H3_DZ_X = -0.7008812889693594
H3_DZ_Y = -0.27057029457805015
H3_DZ_Z = 0.6599675253106057
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 1.5457289070766835
H4_P_Y = 99.49601993748098
H4_P_Z = -148.99579257373574
# Orientation:
H4_DX_X = 0.7653992749257241
H4_DX_Y = -0.4058031577471013
H4_DX_Z = 0.4994874844334447
H4_DY_X = -0.20854697255938404
H4_DY_Y = -0.8906550009799759
H4_DY_Z = -0.4040319658958538
H4_DZ_X = 0.6088284735288612
H4_DZ_Y = 0.20507917103360285
H4_DZ_Z = -0.766335711962256
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 8.943874093657595
H5_P_Y = 83.4494551724464
H5_P_Z = -135.2853301938413
# Orientation:
H5_DX_X = 0.12205538160073459
H5_DX_Y = -0.937366090662934
H5_DX_Z = 0.32626261798981204
H5_DY_X = 0.4482688737417888
H5_DY_Y = -0.24122114882102608
H5_DY_Z = -0.8607365300692891
H5_DZ_X = 0.8855266798107024
H5_DZ_Y = 0.25131090194564365
H5_DZ_Z = 0.3907497023757003
#############  END of Description of junction: j1