############# Start of Description of junction: j9 # Number of strands: NUM_STRANDS = 4 LILLEY = 2HS1HS6HS8 FINGERPRINT = 53:75:117:133:143:148 LOOP_LENGTH_SUM = 15 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 479 S1_NAME_ID3 = 490 S1_NUM_ID5_ORIG = 479 S1_NUM_ID3_ORIG = 490 S1_NAME2_ID5 = 480 S1_NAME2_ID3 = 489 S1_NUM2_ID5_ORIG = 480 S1_NUM2_ID3_ORIG = 489 S1_SQ2 = CUGCAAAGUA S1_SQLEN2 = 10 S1_SQ = GCUGCAAAGUAC S1_SQLEN = 12 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 26 S2_NAME_ID3 = 29 S2_NUM_ID5_ORIG = 26 S2_NUM_ID3_ORIG = 29 S2_NAME2_ID5 = 27 S2_NAME2_ID3 = 28 S2_NUM2_ID5_ORIG = 27 S2_NUM2_ID3_ORIG = 28 S2_SQ2 = UG S2_SQLEN2 = 2 S2_SQ = UUGC S2_SQLEN = 4 S2_CHAR = 0 ## Properties of strand 3 S3_NAME_ID5 = 502 S3_NAME_ID3 = 506 S3_NUM_ID5_ORIG = 502 S3_NUM_ID3_ORIG = 506 S3_NAME2_ID5 = 503 S3_NAME2_ID3 = 505 S3_NUM2_ID5_ORIG = 503 S3_NUM2_ID3_ORIG = 505 S3_SQ2 = GGC S3_SQLEN2 = 3 S3_SQ = AGGCG S3_SQLEN = 5 S3_CHAR = 0 ## Properties of strand 4 S4_NAME_ID5 = 508 S4_NAME_ID3 = 517 S4_NUM_ID5_ORIG = 508 S4_NUM_ID3_ORIG = 517 S4_NAME2_ID5 = 509 S4_NAME2_ID3 = 516 S4_NUM2_ID5_ORIG = 509 S4_NUM2_ID3_ORIG = 516 S4_SQ2 = AUAGAGCA S4_SQLEN2 = 8 S4_SQ = AAUAGAGCAU S4_SQLEN = 10 S4_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 4 H1_INID2 = 2 H1_OUTID2 = 3 H1_INID2_ORIG = 480 H1_OUTID2_ORIG = 28 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = 33.427553887012465 H1_P_Y = 134.31661233653833 H1_P_Z = 56.88833890208998 # Orientation: H1_DX_X = -0.7572210917969642 H1_DX_Y = 0.16843600447916174 H1_DX_Z = -0.6310669778501463 H1_DY_X = 0.5277029077651392 H1_DY_Y = 0.7271192964654745 H1_DY_Z = -0.4391209057238967 H1_DZ_X = 0.38489720611357825 H1_DZ_Y = -0.6655274908692093 H1_DZ_Z = -0.6394742368722248 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 12 H2_INID2 = 2 H2_OUTID2 = 11 H2_INID2_ORIG = 503 H2_OUTID2_ORIG = 489 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 23.875492516909922 H2_P_Y = 169.73523980129846 H2_P_Z = 65.23736853684835 # Orientation: H2_DX_X = -0.41551274475732214 H2_DX_Y = 0.678369318712214 H2_DX_Z = -0.6059407779430046 H2_DY_X = -0.6675970543592022 H2_DY_Y = 0.22501657458337831 H2_DY_Z = 0.7097053713856809 H2_DZ_X = 0.6177890675264095 H2_DZ_Y = 0.6994159053043632 H2_DZ_Z = 0.35938010441890356 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 5 H3_INID2 = 2 H3_OUTID2 = 4 H3_INID2_ORIG = 509 H3_OUTID2_ORIG = 505 H3_INSEQ_CHAR = 0 H3_OUTSEQ_CHAR = 0 # Position: H3_P_X = 7.909331679010002 H3_P_Y = 157.34446607683992 H3_P_Z = 57.532073115150794 # Orientation: H3_DX_X = 0.8171385316442707 H3_DX_Y = 0.156572921243594 H3_DX_Z = -0.5547698085111463 H3_DY_X = 0.3489274679948968 H3_DY_Y = -0.9004119240546515 H3_DY_Z = 0.25982299570834755 H3_DZ_X = -0.45884010524463115 H3_DZ_Y = -0.4058858058043313 H3_DZ_Z = -0.790393870463113 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 10 H4_INID2 = 2 H4_OUTID2 = 9 H4_INID2_ORIG = 27 H4_OUTID2_ORIG = 516 H4_INSEQ_CHAR = 0 H4_OUTSEQ_CHAR = 0 # Position: H4_P_X = 28.55789849768786 H4_P_Y = 141.7102489105783 H4_P_Z = 66.59916667511649 # Orientation: H4_DX_X = -0.9589313548718756 H4_DX_Y = -0.13788070253471574 H4_DX_Z = -0.24787006376752174 H4_DY_X = 0.10086592644184478 H4_DY_Y = -0.9825408380471288 H4_DY_Z = 0.15633159134561936 H4_DZ_X = -0.26509756982404653 H4_DZ_Y = 0.12490962107921177 H4_DZ_Z = 0.9560966818451107 ############# END of Description of junction: j9