#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 35:69:72:82:105:105:115:120:125:173
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AC
S3_SQLEN2 = 2
S3_SQ = ACACUG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = CAGACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 60.31630062077857
H1_P_Y = -63.20839394747235
H1_P_Z = 16.062787256169255
# Orientation:
H1_DX_X = 0.2177274856922793
H1_DX_Y = 0.6755670031802055
H1_DX_Z = 0.7044174658455233
H1_DY_X = -0.9537040806937895
H1_DY_Y = -0.006156580856142568
H1_DY_Z = 0.30068359280176793
H1_DZ_X = 0.20746871677950196
H1_DZ_Y = -0.7372728943385027
H1_DZ_Z = 0.6429505508447697
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 65.76237687079401
H2_P_Y = -32.54592351072702
H2_P_Z = 6.861741174767287
# Orientation:
H2_DX_X = 0.8571183705229828
H2_DX_Y = -0.33960582778735926
H2_DX_Z = -0.38731896499509944
H2_DY_X = -0.341901917224817
H2_DY_Y = 0.18733844332638938
H2_DY_Z = -0.9208731653436537
H2_DZ_X = 0.385293625576665
H2_DZ_Y = 0.9217224036470526
H2_DZ_Z = 0.044459337659017883
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 63.67701889425512
H3_P_Y = -50.86116326498282
H3_P_Z = -6.015338177913046
# Orientation:
H3_DX_X = 0.08906318143364444
H3_DX_Y = 0.7162564327586907
H3_DX_Z = -0.692130386737011
H3_DY_X = -0.5991809713254028
H3_DY_Y = -0.5165641413033626
H3_DY_Z = -0.6116728304584651
H3_DZ_X = -0.7956443384543519
H3_DZ_Y = 0.46918888568605155
H3_DZ_Z = 0.3831603792593974
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 75.69837395070527
H4_P_Y = -60.49990126263285
H4_P_Z = -13.0025895073553
# Orientation:
H4_DX_X = 0.6748007050238414
H4_DX_Y = 0.6232828745045751
H4_DX_Z = 0.3951739703581669
H4_DY_X = -0.009807203398025877
H4_DY_Y = -0.5278453582611462
H4_DY_Z = 0.8492838727561391
H4_DZ_X = 0.7379348394410101
H4_DZ_Y = -0.576972907606141
H4_DZ_Z = -0.3500777579734162
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 81.34877370281282
H5_P_Y = -47.04310006894573
H5_P_Z = 3.7259866740511365
# Orientation:
H5_DX_X = 0.17739104532242322
H5_DX_Y = 0.28905153653064275
H5_DX_Z = 0.9407346205326421
H5_DY_X = 0.6526211188120215
H5_DY_Y = -0.7500347558719582
H5_DY_Z = 0.1073943213798354
H5_DZ_X = 0.7366261550610034
H5_DZ_Y = 0.5948924896259555
H5_DZ_Z = -0.32169058653724036
#############  END of Description of junction: j1