#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 34:65:73:82:106:110:115:117:125:172
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AC
S3_SQLEN2 = 2
S3_SQ = ACACUG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = CAGACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -16.023314887789272
H1_P_Y = 72.43016036407522
H1_P_Z = -145.13851699722792
# Orientation:
H1_DX_X = 0.3118232203377431
H1_DX_Y = -0.6901899675874716
H1_DX_Z = 0.652996238809834
H1_DY_X = -0.9496694367813312
H1_DY_Y = -0.2480291495911615
H1_DY_Z = 0.19133609642858573
H1_DZ_X = 0.029903847605897482
H1_DZ_Y = -0.6797936080860723
H1_DZ_Z = -0.7327935659540685
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -3.422124621352842
H2_P_Y = 82.94945369372594
H2_P_Z = -117.92257912673985
# Orientation:
H2_DX_X = 0.7810043989956625
H2_DX_Y = 0.2868574111929405
H2_DX_Z = -0.5547476492902916
H2_DY_X = -0.228532676869857
H2_DY_Y = 0.9579328189569765
H2_DY_Z = 0.17360164160470504
H2_DZ_X = 0.581209896983975
H2_DZ_Y = -0.008805680486574374
H2_DZ_Z = 0.813706037607588
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -8.473848535687171
H3_P_Y = 94.48318920038597
H3_P_Z = -136.00818862791718
# Orientation:
H3_DX_X = 0.2947445455881521
H3_DX_Y = 0.7502673777654394
H3_DX_Z = 0.5917976974499197
H3_DY_X = -0.6518278411715439
H3_DY_Y = 0.6107152163365157
H3_DY_Z = -0.4496080404181555
H3_DZ_X = -0.6987461043323702
H3_DZ_Y = -0.25323069797323683
H3_DZ_Z = 0.669050144073168
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 1.5933794377737378
H4_P_Y = 99.32413669495266
H4_P_Z = -149.07063569656773
# Orientation:
H4_DX_X = 0.773339824816661
H4_DX_Y = -0.39282200478938023
H4_DX_Z = 0.49763077467716244
H4_DY_X = -0.18672412624637058
H4_DY_Y = -0.891225277765173
H4_DY_Z = -0.41334199514435
H4_DZ_X = 0.6058709565824019
H4_DZ_Y = 0.2267341545193915
H4_DZ_Z = -0.7625693457937359
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 8.896805530648365
H5_P_Y = 83.42933789486506
H5_P_Z = -135.19085363451552
# Orientation:
H5_DX_X = 0.15402984705492706
H5_DX_Y = -0.9340838145008945
H5_DX_Z = 0.3221214579994296
H5_DY_X = 0.4551964490895948
H5_DY_Y = -0.2222710886573651
H5_DY_Z = -0.8622016909536114
H5_DZ_X = 0.8769669315045174
H5_DZ_Y = 0.27943333844500273
H5_DZ_Z = 0.3909552537222396
#############  END of Description of junction: j1