#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 2
LILLEY = HS1HS2
FINGERPRINT = 160
LOOP_LENGTH_SUM = 3
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  4
S1_NAME_ID3 = 10
S1_NUM_ID5_ORIG =  4
S1_NUM_ID3_ORIG = 10
S1_NAME2_ID5 =  6
S1_NAME2_ID3 = 8
S1_NUM2_ID5_ORIG =  6
S1_NUM2_ID3_ORIG = 8
S1_SQ2 = CAC
S1_SQLEN2 = 3
S1_SQ = GUCACAC
S1_SQLEN = 7
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  35
S2_NAME_ID3 = 42
S2_NUM_ID5_ORIG =  35
S2_NUM_ID3_ORIG = 42
S2_NAME2_ID5 =  37
S2_NAME2_ID3 = 40
S2_NUM2_ID5_ORIG =  37
S2_NUM2_ID3_ORIG = 40
S2_SQ2 = GAAG
S2_SQLEN2 = 4
S2_SQ = GUGAAGUC
S2_SQLEN = 8
S2_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 6
H1_OUTID2_ORIG = 40
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 33.93628416160407
H1_P_Y = 13.530404480965387
H1_P_Z = 8.807287689112295
# Orientation:
H1_DX_X = -0.6775254226539431
H1_DX_Y = 0.6539811252324075
H1_DX_Z = 0.33655310056119525
H1_DY_X = 0.21716388167430267
H1_DY_Y = -0.25930936289926265
H1_DY_Z = 0.9410624330026796
H1_DZ_X = 0.7027084389373357
H1_DZ_Y = 0.7106809003712797
H1_DZ_Z = 0.03366760599924845
## Properties of helix 2
H2_INID = 1
H2_OUTID = 7
H2_INID2 = 3
H2_OUTID2 = 5
H2_INID2_ORIG = 37
H2_OUTID2_ORIG = 8
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 16.74273436318823
H2_P_Y = -0.04559825731394351
H2_P_Z = 12.136835056022942
# Orientation:
H2_DX_X = -0.189424679355632
H2_DX_Y = -0.15325362650791097
H2_DX_Z = -0.9698616482845335
H2_DY_X = 0.5410361065657696
H2_DY_Y = -0.8405609524939914
H2_DY_Z = 0.02715173170439833
H2_DZ_X = -0.819388932219109
H2_DZ_Y = -0.519586962023268
H2_DZ_Z = 0.24213873430796262
#############  END of Description of junction: j1