############# Start of Description of junction: j2 # Number of strands: NUM_STRANDS = 2 LILLEY = HS1HS2 FINGERPRINT = 160 LOOP_LENGTH_SUM = 3 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 13 S1_NAME_ID3 = 20 S1_NUM_ID5_ORIG = 13 S1_NUM_ID3_ORIG = 20 S1_NAME2_ID5 = 15 S1_NAME2_ID3 = 18 S1_NUM2_ID5_ORIG = 15 S1_NUM2_ID3_ORIG = 18 S1_SQ2 = GAAG S1_SQLEN2 = 4 S1_SQ = GUGAAGUC S1_SQLEN = 8 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 26 S2_NAME_ID3 = 32 S2_NUM_ID5_ORIG = 26 S2_NUM_ID3_ORIG = 32 S2_NAME2_ID5 = 28 S2_NAME2_ID3 = 30 S2_NUM2_ID5_ORIG = 28 S2_NUM2_ID3_ORIG = 30 S2_SQ2 = CAC S2_SQLEN2 = 3 S2_SQ = GUCACAC S2_SQLEN = 7 S2_CHAR = B ## Properties of helix 1 H1_INID = 1 H1_OUTID = 7 H1_INID2 = 3 H1_OUTID2 = 5 H1_INID2_ORIG = 15 H1_OUTID2_ORIG = 30 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = B # Position: H1_P_X = 13.779138736474065 H1_P_Y = -2.1350585841088705 H1_P_Z = 13.015299125766063 # Orientation: H1_DX_X = 0.09855553530516126 H1_DX_Y = 0.267902845190535 H1_DX_Z = 0.9583918154906854 H1_DY_X = 0.5704905077610931 H1_DY_Y = -0.8043187758215771 H1_DY_Z = 0.16616825032288496 H1_DZ_X = 0.8153694788347199 H1_DZ_Y = 0.5303766325920618 H1_DZ_Z = -0.23210609769047785 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 8 H2_INID2 = 3 H2_OUTID2 = 6 H2_INID2_ORIG = 28 H2_OUTID2_ORIG = 18 H2_INSEQ_CHAR = B H2_OUTSEQ_CHAR = A # Position: H2_P_X = -5.157247773246148 H2_P_Y = -11.871427572127121 H2_P_Z = 15.508826201816287 # Orientation: H2_DX_X = -0.2783963703813024 H2_DX_Y = 0.7458869475695256 H2_DX_Z = -0.6051017454973433 H2_DY_X = 0.29045224270219006 H2_DY_Y = -0.5351302045381274 H2_DY_Z = -0.793267394325678 H2_DZ_X = -0.9154960161943828 H2_DZ_Y = -0.3965959223648152 H2_DZ_Z = -0.06766623009904116 ############# END of Description of junction: j2