#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 33:66:74:82:106:106:114:119:127:171
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 192.04316521297991
H1_P_Y = 119.12292623740552
H1_P_Z = 39.58463323917118
# Orientation:
H1_DX_X = -0.5288397977984687
H1_DX_Y = 0.7786089246458516
H1_DX_Z = 0.3377818981625893
H1_DY_X = -0.057671125763818054
H1_DY_Y = 0.36410274849592383
H1_DY_Z = -0.9295715302174798
H1_DZ_X = -0.8467600070371759
H1_DZ_Y = -0.5110746824090882
H1_DZ_Z = -0.1476487706783587
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 208.8558876791242
H2_P_Y = 140.0636157427568
H2_P_Z = 56.66249300949504
# Orientation:
H2_DX_X = 0.030824177915434348
H2_DX_Y = -0.6793219482362076
H2_DX_Z = 0.7331927172990973
H2_DY_X = 0.9887248842036342
H2_DY_Y = -0.08681860772634309
H2_DY_Z = -0.12200669124680985
H2_DZ_X = 0.14653659410663522
H2_DZ_Y = 0.7286866404683678
H2_DZ_Z = 0.6689864023958734
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 214.59395190769996
H3_P_Y = 120.24532437256954
H3_P_Z = 50.803478708675705
# Orientation:
H3_DX_X = 0.8573462636120723
H3_DX_Y = 0.345088177263861
H3_DX_Z = 0.38193132129102025
H3_DY_X = 0.5135319138184116
H3_DY_Y = -0.5226184318061229
H3_DY_Z = -0.6805548825969012
H3_DZ_X = -0.03524709577263252
H3_DZ_Y = 0.7796051081471944
H3_DZ_Z = -0.6252787519102085
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 214.49992919332118
H4_P_Y = 105.365784898036
H4_P_Z = 58.9508383775729
# Orientation:
H4_DX_X = -0.30205703644850246
H4_DX_Y = 0.5266408919627565
H4_DX_Z = 0.7946136908237946
H4_DY_X = -0.9505853293901794
H4_DY_Y = -0.10365289211654272
H4_DY_Z = -0.2926492943850221
H4_DZ_X = -0.07175707825791733
H4_DZ_Y = -0.8437448956103566
H4_DZ_Z = 0.5319261911688073
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 202.33510006133915
H5_P_Y = 122.55847016340842
H5_P_Z = 66.99383405226122
# Orientation:
H5_DX_X = -0.7927213323798696
H5_DX_Y = 0.6051066643091616
H5_DX_Z = 0.07374831522498937
H5_DY_X = -0.5493020441941496
H5_DY_Y = -0.7615382602830181
H5_DY_Z = 0.34398654387820216
H5_DZ_X = 0.26431071380861226
H5_DZ_Y = 0.23217537107490216
H5_DZ_Z = 0.9360739520103181
#############  END of Description of junction: j1