#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:66:71:82:106:108:117:118:127:172
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  99
S1_NAME_ID3 = 108
S1_NUM_ID5_ORIG =  99
S1_NUM_ID3_ORIG = 108
S1_NAME2_ID5 =  101
S1_NAME2_ID3 = 106
S1_NUM2_ID5_ORIG =  101
S1_NUM2_ID3_ORIG = 106
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  57
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  57
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  59
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  59
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  309
S3_NAME_ID3 = 314
S3_NUM_ID5_ORIG =  309
S3_NUM_ID3_ORIG = 314
S3_NAME2_ID5 =  311
S3_NAME2_ID3 = 312
S3_NUM2_ID5_ORIG =  311
S3_NUM2_ID3_ORIG = 312
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  331
S4_NAME_ID3 = 336
S4_NUM_ID5_ORIG =  331
S4_NUM_ID3_ORIG = 336
S4_NAME2_ID5 =  333
S4_NAME2_ID3 = 334
S4_NUM2_ID5_ORIG =  333
S4_NUM2_ID3_ORIG = 334
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  345
S5_NAME_ID3 = 352
S5_NUM_ID5_ORIG =  345
S5_NUM_ID3_ORIG = 352
S5_NAME2_ID5 =  347
S5_NAME2_ID3 = 350
S5_NUM2_ID5_ORIG =  347
S5_NUM2_ID3_ORIG = 350
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 101
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 392.6033047227598
H1_P_Y = 109.91942601722772
H1_P_Z = 35.85789094699334
# Orientation:
H1_DX_X = -0.7254071061066156
H1_DX_Y = -0.33034404133537976
H1_DX_Z = 0.6038686486018534
H1_DY_X = 0.14230165262125638
H1_DY_Y = -0.9303292021404275
H1_DY_Z = -0.337990850920626
H1_DZ_X = 0.6734499016788504
H1_DZ_Y = -0.15924945839464044
H1_DZ_Z = 0.7218759172667575
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 311
H2_OUTID2_ORIG = 106
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 363.105720818515
H2_P_Y = 118.29664807926633
H2_P_Z = 27.219388008382264
# Orientation:
H2_DX_X = 0.22258647996062564
H2_DX_Y = 0.9199543631179239
H2_DX_Z = 0.32270610269876343
H2_DY_X = -0.04966924467174749
H2_DY_Y = 0.3412812175801463
H2_DY_Z = -0.9386480153181758
H2_DZ_X = -0.9736468687735282
H2_DZ_Y = 0.19290178927970203
H2_DZ_Z = 0.12165802324640396
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 333
H3_OUTID2_ORIG = 312
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 382.13770771954694
H3_P_Y = 125.92768069141451
H3_P_Z = 19.750042180429816
# Orientation:
H3_DX_X = -0.6242267509562112
H3_DX_Y = 0.4571792310734537
H3_DX_Z = -0.633504628290698
H3_DY_X = 0.6992006706219627
H3_DY_Y = -0.03480433216806489
H3_DY_Z = -0.714077783343054
H3_DZ_X = -0.34851023742845655
H3_DZ_Y = -0.8886933155692134
H3_DZ_Z = -0.29793422977253314
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 347
H4_OUTID2_ORIG = 334
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 390.5105176278969
H4_P_Y = 140.42987845408632
H4_P_Z = 23.78957943519553
# Orientation:
H4_DX_X = -0.7549605154036954
H4_DX_Y = 0.21701125389139975
H4_DX_Z = 0.6188220550900319
H4_DY_X = 0.44924077948871854
H4_DY_Y = -0.5162908803995663
H4_DY_Z = 0.7291271829116006
H4_DZ_X = 0.4777209878430426
H4_DZ_Y = 0.8284623361992658
H4_DZ_Z = 0.2922889243086857
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 59
H5_OUTID2_ORIG = 350
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 374.79649934940466
H5_P_Y = 132.64075401552293
H5_P_Z = 37.782447942373174
# Orientation:
H5_DX_X = -0.3972106732936709
H5_DX_Y = -0.5097908550614534
H5_DX_Z = 0.7631100609461683
H5_DY_X = 0.6263487301685586
H5_DY_Y = 0.4571553324052786
H5_DY_Z = 0.6314240019746009
H5_DZ_X = -0.6707540154466187
H5_DZ_Y = 0.728781370610676
H5_DZ_Z = 0.13771987733479563
#############  END of Description of junction: j1