#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:66:73:79:108:108:114:117:124:173
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AC
S3_SQLEN2 = 2
S3_SQ = ACACUG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = CAGACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 61.85159503381375
H1_P_Y = -65.46571535813837
H1_P_Z = 15.843611539558704
# Orientation:
H1_DX_X = 0.2471035146591376
H1_DX_Y = 0.6475149067890271
H1_DX_Z = 0.7208774504235134
H1_DY_X = -0.9402650935671488
H1_DY_Y = -0.019566104106104376
H1_DY_Z = 0.3398804516139098
H1_DZ_X = 0.2341824221889297
H1_DZ_Y = -0.7618015575306458
H1_DZ_Z = 0.6040008113252977
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 67.13282560204502
H2_P_Y = -35.105447972682406
H2_P_Z = 7.175549588772303
# Orientation:
H2_DX_X = 0.8513297899337005
H2_DX_Y = -0.3069969513396842
H2_DX_Z = -0.4254297364307966
H2_DY_X = -0.3655215149109807
H2_DY_Y = 0.23461551800502178
H2_DY_Z = -0.9007494550919377
H2_DZ_X = 0.37633975462155433
H2_DZ_Y = 0.9223385661346768
H2_DZ_Z = 0.0875211889316656
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 64.56495722702705
H3_P_Y = -52.72636032085803
H3_P_Z = -5.835854931097358
# Orientation:
H3_DX_X = 0.08699417412196908
H3_DX_Y = 0.707230267842121
H3_DX_Z = -0.7016105486071256
H3_DY_X = -0.6263448037920867
H3_DY_Y = -0.508836498048197
H3_DY_Z = -0.5905739623592474
H3_DZ_X = -0.7746768361268437
H3_DZ_Y = 0.4908266155191683
H3_DZ_Z = 0.3987041924365826
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 76.32466651862862
H4_P_Y = -62.61417037136234
H4_P_Z = -13.477711675609633
# Orientation:
H4_DX_X = 0.6978572053462244
H4_DX_Y = 0.602624743625988
H4_DX_Z = 0.3870900919890303
H4_DY_X = -0.01070067160028998
H4_DY_Y = -0.531617218242701
H4_DY_Z = 0.8469171322480111
H4_DZ_X = 0.7161569776059338
H4_DZ_Y = -0.5951693470245303
H4_DZ_Z = -0.3645444167570382
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 82.70550840163808
H5_P_Y = -49.21875809327526
H5_P_Z = 3.238126761453513
# Orientation:
H5_DX_X = 0.1788708193646471
H5_DX_Y = 0.24481813575437883
H5_DX_Z = 0.9529267077722032
H5_DY_X = 0.6392030398711057
H5_DY_Y = -0.7652126950866176
H5_DY_Z = 0.07660943217264782
H5_DZ_X = 0.7479469926400952
H5_DZ_Y = 0.5954104564785752
H5_DZ_Z = -0.29336271834813665
#############  END of Description of junction: j1