#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:65:73:82:107:108:117:119:126:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.44153620289381
H1_P_Y = 44.016993361649774
H1_P_Z = 8.360844843790293
# Orientation:
H1_DX_X = -0.12188143078705593
H1_DX_Y = 0.8081624116408292
H1_DX_Z = 0.5762104070911747
H1_DY_X = -0.944375041680729
H1_DY_Y = 0.08423478897701386
H1_DY_Z = -0.3178997970690247
H1_DZ_X = -0.30545162870711806
H1_DZ_Y = -0.5829048093272817
H1_DZ_Z = 0.7529417545755397
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 130.72417635786945
H2_P_Y = 70.12650715837702
H2_P_Z = -1.3120781010265992
# Orientation:
H2_DX_X = 0.8358145276235973
H2_DX_Y = -0.45037777027302184
H2_DX_Z = 0.3139648697820536
H2_DY_X = 0.3212794457710402
H2_DY_Y = -0.06248504997874704
H2_DY_Z = -0.9449207036858636
H2_DZ_X = 0.4451893901907624
H2_DZ_Y = 0.8906489109481157
H2_DZ_Z = 0.09247120788939434
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 133.23617299712444
H3_P_Y = 49.514291035902914
H3_P_Z = -8.229188870491424
# Orientation:
H3_DX_X = 0.5918759011720454
H3_DX_Y = 0.48088246181411165
H3_DX_Z = -0.6468655003409882
H3_DY_X = -0.2289417898876991
H3_DY_Y = -0.6691818473244808
H3_DY_Z = -0.7069521285450726
H3_DZ_X = -0.7728315304481441
H3_DZ_Y = 0.5665224736327659
H3_DZ_Z = -0.28597851739982083
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 144.5649994199126
H4_P_Y = 37.75362979228286
H4_P_Z = -4.218685018507969
# Orientation:
H4_DX_X = 0.4437889605937073
H4_DX_Y = 0.6777291199300208
H4_DX_Z = 0.5862888353482871
H4_DY_X = -0.6087687543153777
H4_DY_Y = -0.2521025325820503
H4_DY_Z = 0.7522266392750327
H4_DZ_X = 0.6576107984396629
H4_DZ_Y = -0.6907442023387489
H4_DZ_Z = 0.3006999912054189
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 141.82051068690404
H5_P_Y = 55.272555718739426
H5_P_Z = 9.452388254907227
# Orientation:
H5_DX_X = -0.35616901871441087
H5_DX_Y = 0.5574935098792793
H5_DX_Z = 0.7498964038789016
H5_DY_X = 0.2992412704000458
H5_DY_Y = -0.692209747011681
H5_DY_Z = 0.656734594970743
H5_DZ_X = 0.8852108744233647
H5_DZ_Y = 0.45830846881167275
H5_DZ_Z = 0.07971860020163568
#############  END of Description of junction: j1