#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:64:73:83:106:107:117:118:126:168
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 114.8817810673967
H1_P_Y = 43.401081448861355
H1_P_Z = 7.892142568980437
# Orientation:
H1_DX_X = -0.10945622404675248
H1_DX_Y = 0.800870979156457
H1_DX_Z = 0.5887486813254155
H1_DY_X = -0.9462316969756444
H1_DY_Y = 0.0974409061712791
H1_DY_Z = -0.3084653067090546
H1_DZ_X = -0.304409117235366
H1_DZ_Y = -0.590856111544511
H1_DZ_Z = 0.7471439920085539
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 130.51293067527465
H2_P_Y = 69.76782534448117
H2_P_Z = -1.7513880357157454
# Orientation:
H2_DX_X = 0.8301635949397621
H2_DX_Y = -0.4466219213869067
H2_DX_Z = 0.33370235985584595
H2_DY_X = 0.3427037596790967
H2_DY_Y = -0.06332282574018677
H2_DY_Z = -0.9373069683097912
H2_DZ_X = 0.4397528154981103
H2_DZ_Y = 0.8924791757105197
H2_DZ_Z = 0.10049070695617601
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 133.02429282006023
H3_P_Y = 49.20704473540287
H3_P_Z = -8.884305335189218
# Orientation:
H3_DX_X = 0.5601039241410604
H3_DX_Y = 0.5157367510492392
H3_DX_Z = -0.6483048648428991
H3_DY_X = -0.2394205099355986
H3_DY_Y = -0.6484071933002866
H3_DY_Z = -0.7226658502368988
H3_DZ_X = -0.7930708755111198
H3_DZ_Y = 0.5599854598948255
H3_DZ_Z = -0.23969745748005877
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 144.4279964406018
H4_P_Y = 37.39916689911991
H4_P_Z = -4.784151003449393
# Orientation:
H4_DX_X = 0.4325107922975917
H4_DX_Y = 0.6770127314023995
H4_DX_Z = 0.5954730691350916
H4_DY_X = -0.6201732232980248
H4_DY_Y = -0.256008180106015
H4_DY_Z = 0.7415153301334767
H4_DZ_X = 0.6544612957618483
H4_DZ_Y = -0.6900098356095086
H4_DZ_Z = 0.3091388670352977
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 141.88625048550128
H5_P_Y = 54.672153875552404
H5_P_Z = 8.949843008449367
# Orientation:
H5_DX_X = -0.3789146874312337
H5_DX_Y = 0.5587397368999518
H5_DX_Z = 0.7377218758162698
H5_DY_X = 0.27390159398268565
H5_DY_Y = -0.6937389344153928
H5_DY_Z = 0.6661112577414752
H5_DZ_X = 0.883969216920292
H5_DZ_Y = 0.4544625367234971
H5_DZ_Z = 0.10982816693450026
#############  END of Description of junction: j1