RNAJunction Database - Junction Profile:12220
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 12220: 2NOQ_j2_B-C504_B-C526

Primary Citation: (from PDB entry 2NOQ)

M.SCHULER S.R.CONNELL A.LESCOUTE J.GIESEBRECHT M.DABROWSKI B.SCHROEER T.MIELKE P.A.PENCZEK E.WESTHOF C.M.T.SPAHN STRUCTURE OF THE RIBOSOME-BOUND CRICKET PARALYSIS VIRUS IRES RNA. NAT.STRUCT.MOL.BIOL. V. 13 1092 2006

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1HNW j2 A-C504 A-C526 
NC-IUBMB Classification:2HS14Cluster Page
Angles: 3°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.32155Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: GCCGCGGUAAUACGGAGGGC 20nt

Strand 2: Chain B: GCCGGC 6nt

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