RNAJunction Database - Junction Profile:5559
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 5559: 1S1H_j4_A-G115_A-U239_A-G286_A-C311

Primary Citation: (from PDB entry 1S1H)

C.M.SPAHN M.G.GOMEZ-LORENZO R.A.GRASSUCCI R.JORGENSEN G.R.ANDERSEN R.BECKMANN P.A.PENCZEK J.P.G.BALLESTA J.FRANK DOMAIN MOVEMENTS OF ELONGATION FACTOR EEF2 AND THE EUKARYOTIC 80S RIBOSOME FACILITATE TRNA TRANSLOCATION. EMBO J. V. 23 1008 2004

Experimental Method: ELECTRON_MICROSCOPY

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:4-wayCluster:1I97 j4 A-G108 A-U234 A-G281 A-C306 
NC-IUBMB Classification:Cluster Page
Angles: 60:71:103:107:126:173°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 2.12599Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GUCC 4nt

Strand 2: Chain A: UGAGUAACGC 10nt

Strand 3: Chain A: GGUAGC 6nt

Strand 4: Chain A: GCCA 4nt

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