RNAJunction Database - Junction Profile:9504
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 9504: 1YXP_j4_A-G7_A-C15_B-G7_B-C15

Primary Citation: (from PDB entry 1YXP)

E.ENNIFAR P.DUMAS POLYMORPHISM OF BULGED-OUT RESIDUES IN HIV-1 RNA DIS KISSING COMPLEX AND STRUCTURE COMPARISON WITH SOLUTION STUDIES. J.MOL.BIOL. V. 356 771 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:4-wayCluster:1Y3S j4 A-G7 A-C15 B-G7 B-C15 
NC-IUBMB Classification:Cluster Page
Angles: 10:12:169:170:174:179°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.44215Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UGAAGU 6nt

Strand 2: Chain A: ACACA 5nt

Strand 3: Chain B: ACACA 5nt

Strand 4: Chain B: UGAAGU 6nt

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