RNAJunction Database - Junction Profile:7889
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 7889: 1VS6_j5_B-C584_B-A668_B-A800_B-G1195_B-U1240

Primary Citation: (from PDB entry 1VS6)

B.S.SCHUWIRTH A.VILA-SANJURJO J.H.D.CATE STRUCTURAL ANALYSIS OF KASUGAMYCIN INHIBITION OF TRANSLATION. NAT.STRUCT.MOL.BIOL. V. 13 879 2006

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:1VS6 j5 B-C584 B-A668 B-A800 B-G1195 B-U1240 
NC-IUBMB Classification:Cluster Page
Angles: 61:67:85:94:101:104:106:115:133:161°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.84936Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain B: AUAGACCCGAAACC 14nt

Strand 2: Chain B: AGCGACUUAU 10nt

Strand 3: Chain B: GGAGAUAGCUGGUUCUC 17nt

Strand 4: Chain B: GAGCGUUCUGUAAGCC 16nt

Strand 5: Chain B: GGUAUCAGAAGUGCGAAUGCU 21nt

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